Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0018 ATGCTGCTACGCTCTACGCTGTGCCTTTGGTTCTATTTTCTTTTTCTGCCTCTCTCTCGTTCATCCCAAGAAAGCGCCGAGTCTCAGACTCACCGACCTCCCGATCCCTCTTCATCTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTAGGCGGTACGCGGATTAAGACCCGCAAACGGAATATTGCAGCACCACTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTGTTGCTAAGATTATTGAATCTTCAGATCTTAACTTCTCAAGATATGGTGACACCTTTTTTGAGGTTGTTTTCACTGGGGGGCGTACACAACCTGGAACCACCAAGCCTGATGAGGGGGAGCGCCACCCTTACTCTATAATTGAGTGTGAACCAAAGCGTGAAGTCATTTTACCATCTGTGATCTACATACAAAAGATTTTGCGGCGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTTATGCGAAGATTCCTGCAGTCATTGGAGCTTTTTGAAGAAAATGAGCGGAAAAAGTTGGCAATCTTTACTGCACTTGCATTCTCCCAGAAGCTATCTGGCCTTCCACCAGAGACTGTGTTTCAGCCGCTTCTCAAAGATAATCTTGTTGCCAAAGGGCTAGTTCTGTCCTTTATAACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCGATTCTGAAACGGGGAAAAGTGGAGGACAATCTTTTGAACTTCTTTCCGCCTGCCAAAAGATCTAATGAATCTTTCTCTGATCATTTTAACAAGGAAGGACTGGTAGCCTTGGTGGAGTACAATGAGAAGAAAATATTCGAGGTGAAACTTAAGGAAATGAAGTCTGCTTTAACGACACAGATAACAGAGGAGACTGATATTTCTGAAGTCATTGAAACTGTGAAACTGCGGGTTAGAGATGCTAAATTGCCAGATACAGAGGCTGTGCGGGTTTTATGGGATGTCCTAATGGATGCTGTTCAGTGGTCGGGGAAAAATCAGCAACAGAATGCAAATGCTGCCCTGCGCCAGGTAAAAACTTGGGCAGAACTGTTAAATACTTTCTGCACCAGTGGGAAACTTGAGCTGGAATTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAGCTGATGAAGCTGTTCCCTGAGATTGTTAGGTCTCTTTATGACCAGGATGTGCTGGCTGAAGATACCATCCTTCATTGGTTCCGAAAAGGAACAAACACTAAGGGAAGGCAAACCTTTGTGAAGGCACTGGAGCCCTTTGTTAATTGGCTGGAGGAGGCAGAAGAGGAAGAATAA 1359 0.4437 MLLRSTLCLWFYFLFLPLSRSSQESAESQTHRPPDPSSSWFMSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELVAKIIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLIDNSLDDLISILKRGKVEDNLLNFFPPAKRSNESFSDHFNKEGLVALVEYNEKKIFEVKLKEMKSALTTQITEETDISEVIETVKLRVRDAKLPDTEAVRVLWDVLMDAVQWSGKNQQQNANAALRQVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0018 452 SMART 542_3 366 451 IPR003307 GO:0005515
Glsi11g0018 452 MobiDBLite consensus disorder prediction 25 46 - -
Glsi11g0018 452 Coils Coil 162 182 - -
Glsi11g0018 452 SUPERFAMILY ARM repeat 294 449 IPR016024 -
Glsi11g0018 452 ProSiteProfiles W2 domain profile. 287 452 IPR003307 GO:0005515
Glsi11g0018 452 MobiDBLite consensus disorder prediction 25 48 - -
Glsi11g0018 452 FunFam ARM repeat superfamily protein 284 452 - -
Glsi11g0018 452 Pfam eIF4-gamma/eIF5/eIF2-epsilon 379 452 IPR003307 GO:0005515
Glsi11g0018 452 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 43 452 - -
Glsi11g0018 452 CDD W2_eIF5C_like 257 445 IPR043510 -
Glsi11g0018 452 Gene3D - 284 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0018 Glsi-ChrGlsi11 172751 187157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0018 341 448 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 4.80e-09 56.6