Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0007 ATGTGTACATCATTTTTCTTGCGATATCTTCAAAGAATTAGTTGTTGGGGCGGGCAAGTAGGCCGAACAGTGAATTATCCTCGATTGGACACTAGTAAATCAGTTATCCGGCCTCTAGTCTGGTCCAGACAAATGGGGAAACCGGATTTACATATAAACCCTTCAAAATCTTTCATAAGCTGGGATGGAGCTCTATTTATATACAGAAGTGAAAGCAACTCCTTTCTTTACTTGACCGATCCAGCTAATCAGGATCACTCTCGCCTCAGCTTCAACTCAGACGAAATCTCCGGCACTGATGCTTCTCGCGAGTGCTTTTATCTCACCTCTGACTCCACTGCTCATTCACTCCACCTCCCTCCTTCTTTTGGCATATTTGAAGCATTCAACAGAAATAATAATTATACCCAAGATTGGGACATAAAGGGTTTAGGAAGCAACACGGAGAACTACAAGACCGCCTCTTACTTGCCCATGCTAAGGGGCACATCATGCAGCAGCCAAAACCTGGACAACAACCAACTACAGCCAAAACTTGAAAACTTCCTCGGCCGACACTCTTATGGTGATGACGACCACGTAGCATACGGTAACGCCTCCACCGGAGATTACATGTTCCCTAACTGTTCTATACAGGCTGCCGAAACATCAGCCGATGGCGGTACTAGCAGTAGCAGCTCGATTGGGTTGTCTATGATAAAGACATGGCTGAGAAACCAACCGACGCAGTCAGACAACAACGAGAGCGGTGGTAATGCTGCAACTTCTGGATATAACGCTCAGACTTTATCGCTTTCCATGAGTACGGGGTCACAATCAAGCTCAACATTGCCTCTTCTTACGGCGAATGTGGGTGGAGGGAGTTCCTCATCTGATAACAAGCAATCGAAAACCTCCACGCCCCTTGATACCCAAACTGGCGCTACTGAGACTGTGCCCAGAAAGTCCATTGACACTTTTGGTCAGAGGACTTCCATATACCGTGGTGTAACTAGGTGGACGGGGAGATATGAGGCTCACCTCTGGGATAATAGTTGTAGAAGAGAGGGCCAAACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTCGAGCCTACGACTTAGCTGCACTAAAGTATTGGGGAACCACTACGACTACAAATTTCCCTGTAGGCACCCAAGAAGAGGCGGCAGAGGCATATGATATTGCAGCTATTAAGTTCCGAGGACTCAACGCAGTTACAAACTTCGACATGAGTAGATACGACGTTAAGAGCATAATCGAGAGCAGCACCTTGCCCATTGGTGGGGCTGCAAAGCGTTTGAAAGATGCGGAGCATGCCGAAGTGAGTGTAGATTGCGAAAGGAAAGACGACCATAGCATGAGCTCTCAGCTAACCGACGGAATCAACAACTATAGCTGGCCTGCTCTTACATTCCAGCAACCTCAACCTCAGCCTTATAGCTTGCCCTACCCATACGGCCAAAGGCTCTGGTGCAAGCAAGAGCAAGATTCTGATACTTCTCATACCTTTCAGGATATTCATCAACTACAATTGGGCAACGGGAATACCCACAATTTCCTTCACTCTAATTCTCTAGGTTCGCACAGTATCATGAGTGTGGAGTACTCCCACTCTGCTTCCATGGATAATAGCTCTGGAGGTGGAGGTGGTGGCGAAGGTAGTGGCTATGGCTACCTCCTTCCAATGAGTACTGATGGTAACCAAAATCAAAGAAGCAATGGTTTGGGTGATACTGGTTACGAAAGTGTCTTTGGATGTACTGATCCTTATCATCATCATGCAAGGAACTTGTATTATATTTCGCAGCAATCATCTGCAGATGCTGTTAAAGCTAGCACATATGATCAAGGCTCCGCATGCAACACTTGGGTGCCATCTGCAATTCCAACTCTTGCACCGAGGTCTACCAATATGGCTCTGTGCCCCGGAGCTCCACCTTTCACATTATTACATGAATAA 1977 0.4674 MCTSFFLRYLQRISCWGGQVGRTVNYPRLDTSKSVIRPLVWSRQMGKPDLHINPSKSFISWDGALFIYRSESNSFLYLTDPANQDHSRLSFNSDEISGTDASRECFYLTSDSTAHSLHLPPSFGIFEAFNRNNNYTQDWDIKGLGSNTENYKTASYLPMLRGTSCSSQNLDNNQLQPKLENFLGRHSYGDDDHVAYGNASTGDYMFPNCSIQAAETSADGGTSSSSSIGLSMIKTWLRNQPTQSDNNESGGNAATSGYNAQTLSLSMSTGSQSSSTLPLLTANVGGGSSSSDNKQSKTSTPLDTQTGATETVPRKSIDTFGQRTSIYRGVTRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPVGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSTLPIGGAAKRLKDAEHAEVSVDCERKDDHSMSSQLTDGINNYSWPALTFQQPQPQPYSLPYPYGQRLWCKQEQDSDTSHTFQDIHQLQLGNGNTHNFLHSNSLGSHSIMSVEYSHSASMDNSSGGGGGGEGSGYGYLLPMSTDGNQNQRSNGLGDTGYESVFGCTDPYHHHARNLYYISQQSSADAVKASTYDQGSACNTWVPSAIPTLAPRSTNMALCPGAPPFTLLHE 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0007 658 ProSiteProfiles AP2/ERF domain profile. 326 387 IPR001471 GO:0003700|GO:0006355
Glsi11g0007 658 ProSiteProfiles AP2/ERF domain profile. 390 415 IPR001471 GO:0003700|GO:0006355
Glsi11g0007 658 CDD AP2 325 388 IPR001471 GO:0003700|GO:0006355
Glsi11g0007 658 Gene3D AP2/ERF domain 389 417 IPR036955 GO:0003700|GO:0006355
Glsi11g0007 658 Gene3D AP2/ERF domain 326 388 IPR036955 GO:0003700|GO:0006355
Glsi11g0007 658 SMART rav1_2 326 393 IPR001471 GO:0003700|GO:0006355
Glsi11g0007 658 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 389 500 - -
Glsi11g0007 658 MobiDBLite consensus disorder prediction 265 317 - -
Glsi11g0007 658 SUPERFAMILY DNA-binding domain 325 388 IPR016177 GO:0003677
Glsi11g0007 658 Pfam AP2 domain 327 379 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0007 Glsi-ChrGlsi11 95287 103127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0007 177 507 AP2-EREBP Transcription Factor Family AT3G20840 37.379 4.97e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g0007 AP2 2.3e-05 CL0081