Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2903 ATGGGTCAGTTTGCCACACGATTGGAGTTGCACTCGAATTATAAAAGGTCAGTCCGACAGCAACACTCCAATTCTGGTGGTAGACCTTCCAAGAATTCAGGAAAGATCGGTTCACCCAGGAGACCCTCAGAAGATCAAGGTTCTCTGTATCCCTTGTTTAATTTTTTAATCATGCAGGACCTTGTCATTAACCAAGTTCACCCTAAACCCGTCAGCTGTTCTGTCCGCAGAAAGAATTTCCCATCCATGAAGTCCGTGTATGGCCACATGAGATCGCCCCCCGAAAGGGAGTGGAGGGGAATTCAATCCCCTTTCACCACTCCCAATACGACGAGTTATGTTGTAACCGCCAAGAGAAGCCGCAAAAGAATAGCTGCCGATACAGAGTCTGCTTTACCTCCCGATATAGTAGCCCTTATGGAGGAATCCGTCTTTGAACTCATGATGCTCGCTTATGGGAAGACTCTAGAATGCGTTGAGGTGGAGGTGCCTGCTAGCGTCTGCTTGTTCTTGAAGGACAAAAGCCCCGTACTTGAATATGCAAGAAAGTCCCAGAAAGGGCTTGAGTTGTCAGTTTTACCAACCAAGAAGGCAAGAAAGGTGAAACCAGCTGAAGAGAGCAACAAATTAATAACTAAGTCTGGCACTGGCAATGGCACTTGTACTTGCGGTGACGCTGGCACACCCAATAGCTACATATGCATGATATGCAATAAATCATTCCCAAGTCACCAAGCTTTGGGTGGTCACCGGTCCAGCCACAACAAATCCAAGAACTTTCAAGTAATGAATAAATCCAAATCAGCACATGTTTCAGCCGAAGTGGTGGAGAAGCATCACGTCAAGCCCACCATGCAAGCTGATGAAACGGAAACCGAAACCGAAAGTGTAGCTAAAGATGGAGTCGGGTTAAGTGTGAAAGGGAAAAGTGTACACCTATGTAATATTTGCAATAAGATCTTCGCAACAGGTCAAGCCCTTGGGGGCCACAAAAGATGTCATTGGACCGGTATTCCAGAAGCTCAGTCAGCACTAGAAACCACCGGCACTCAAACATGTCCTATGATTTTGATTGATCTAAATGAATTTCTGGCGATTGATGGGGAAGATGCCGTCCAATCACCAGCGGTATCTGGTTCAGCTTCCTCCACTCACAATACAGATACTAAAAGTAATTAG 1179 0.4597 MGQFATRLELHSNYKRSVRQQHSNSGGRPSKNSGKIGSPRRPSEDQGSLYPLFNFLIMQDLVINQVHPKPVSCSVRRKNFPSMKSVYGHMRSPPEREWRGIQSPFTTPNTTSYVVTAKRSRKRIAADTESALPPDIVALMEESVFELMMLAYGKTLECVEVEVPASVCLFLKDKSPVLEYARKSQKGLELSVLPTKKARKVKPAEESNKLITKSGTGNGTCTCGDAGTPNSYICMICNKSFPSHQALGGHRSSHNKSKNFQVMNKSKSAHVSAEVVEKHHVKPTMQADETETETESVAKDGVGLSVKGKSVHLCNICNKIFATGQALGGHKRCHWTGIPEAQSALETTGTQTCPMILIDLNEFLAIDGEDAVQSPAVSGSASSTHNTDTKSN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2903 392 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Glsi10g2903 392 MobiDBLite consensus disorder prediction 9 44 - -
Glsi10g2903 392 Pfam C2H2-type zinc finger 311 335 - -
Glsi10g2903 392 Pfam C2H2-type zinc finger 232 256 - -
Glsi10g2903 392 SMART c2h2final6 312 334 IPR013087 -
Glsi10g2903 392 SMART c2h2final6 232 254 IPR013087 -
Glsi10g2903 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 339 IPR013087 -
Glsi10g2903 392 ProSitePatterns Zinc finger C2H2 type domain signature. 314 334 IPR013087 -
Glsi10g2903 392 MobiDBLite consensus disorder prediction 17 39 - -
Glsi10g2903 392 Gene3D Classic Zinc Finger 230 334 - -
Glsi10g2903 392 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 362 IPR044653 GO:0003700
Glsi10g2903 392 SUPERFAMILY beta-beta-alpha zinc fingers 231 334 IPR036236 -
Glsi10g2903 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2903 Glsi-ChrGlsi10 56261998 56263176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2903 232 335 C2H2 Transcription Factor Family AT3G19580 39.423 1.63e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g2903 zf-C2H2_6 1.2e-10 CL0361