Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2883 ATGATGGATCTGTCGACGTGCGATATGTTCTCTGGCGGGTCATCCACGGCCAGCCTTGAAGATATTGAATCCGAGGATGACCTTTGCTGGGGTAGTGGTTGGAATGGATTGGATCAGAGTAGGAATTGTAGTGAGAATGGTAGAGGCGCAAGCAATCACAATGAAATGAAGAACCCGAGTGCGAGACCAAGACATAGGTATAGTAGCTCCATCGATGGGTCGACGTCTACAGGCATGTTTGGGGAGATTATGGAGGCAAAGAAAGCTAGGCCTCCTGATAAGTTAGCCGAGCTCTGGACGGTTGATCCAAAGCGCGCCAAGAGAATACTGGCAAATAGACAATCTGCTGCTCGTTCAAAAGAGAGGAAGGCCCATTACATACAAGACCTTGAGCGTAAAGTTCAGACCATTCAGACTGAAGCCACAACACTTTCTGCCCAACTTACATTGTATCAGAGGGACACAAGAAGTATGAGTACTGAAAATACGGAGCTCAAACTTCATCTACAAACCATGGAGCGACGGGCACATTTTGGAGATGCTCTCAATGAAGCATTGAAGAAGGAAGTTGAGAGGCTTAAGATAGCTACTGGGGAGATAATAAGCCCTTTCGAGTCTTTTAATCTGCCCGAGGGTGAAGTTGGATTCTACACAGGAACTGGCGATGTTGAATATCACTTGGGAACTTCTTATGACCGCCCGGCGAGAGGAGGGAGGAGGACACATTTGTCTTTGGTTGCAAATCCTAGTCACTTGGAAGCAGTCGACCCAGTTGTTGTTGGGAAAACTAGAGCCAAGCAGTATTACTCAAATGATGTGGACAAGACAAAACACATGGGTGTTTTGATTCATGGAAATGGTAGTTTTACCTTTCTATGA 879 0.4619 MMDLSTCDMFSGGSSTASLEDIESEDDLCWGSGWNGLDQSRNCSENGRGASNHNEMKNPSARPRHRYSSSIDGSTSTGMFGEIMEAKKARPPDKLAELWTVDPKRAKRILANRQSAARSKERKAHYIQDLERKVQTIQTEATTLSAQLTLYQRDTRSMSTENTELKLHLQTMERRAHFGDALNEALKKEVERLKIATGEIISPFESFNLPEGEVGFYTGTGDVEYHLGTSYDRPARGGRRTHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDKTKHMGVLIHGNGSFTFL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2883 292 Gene3D - 162 291 - -
Glsi10g2883 292 Coils Coil 127 147 - -
Glsi10g2883 292 FunFam probable transcription factor PosF21 103 156 - -
Glsi10g2883 292 Gene3D - 104 154 - -
Glsi10g2883 292 MobiDBLite consensus disorder prediction 41 76 - -
Glsi10g2883 292 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 202 290 IPR029061 -
Glsi10g2883 292 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 102 165 IPR004827 GO:0003700|GO:0006355
Glsi10g2883 292 SMART brlzneu 100 164 IPR004827 GO:0003700|GO:0006355
Glsi10g2883 292 Pfam bZIP transcription factor 104 162 IPR004827 GO:0003700|GO:0006355
Glsi10g2883 292 SUPERFAMILY Leucine zipper domain 104 154 IPR046347 GO:0003700|GO:0006355
Glsi10g2883 292 CDD bZIP_plant_RF2 105 154 IPR044759 GO:0003700|GO:0006355
Glsi10g2883 292 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 46 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2883 Glsi-ChrGlsi10 54890039 54893865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2883 60 209 bZIP Transcription Factor Family AT2G40620 71.333 6.54e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi10g2883 bZIP_1 2.2e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0475 08 3968078 3970835 Glsi10g2883 10 54890039 54893865 CCT
Glsi10g2883 10 54890039 54893865 Glsi10g2883 10 54890039 54893865 ECH