Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2882 ATGAGATTGATTAAGGTGGGAAGGAAGACTGTTGGGGAAGCATGTGCAGGGGTGAGGCCCACAGGTTTAACGGTTGGGAATCCAGCTAGAACCAGCGCATGTGCGTTTGATTTGTCACTTGTATTTTCTGTTTCCCTAATGCTTCTTGTCCTTCTCTTTATCAACATGCACCTCCAACACGCCACCGCTGACTACGGCGGTTGGCAGAGTGCTCATGCAACTTTCTACGGCGGCGGTGATGCCACTGGCACCATGGGAGGAGCATGTGGGTATGGGAATTTGTATAGCCAGGGCTATGGAACTGACACTGCAGCTCTAAGCACAGCTTTATTCAACAATGGCTTAAGCTGCGGTGCTTGTTATGAAATGAGATGCAATGATGACCCACGATGGTGCAAGCCTGGTTCCATCATTGTTACTGCTACAAACTTTTGCCCACCAAACTTTGCTTTGCCCAACAACAATGGTGGTTGGTGCAACCCGCCTCTGCAGCACTTTGATATGGCAGAACCAGCCTTCCTGCAAATTGCTCAATACAAAGCTGGAATTGTGCCTATAACTTTTAGAAGAGTGCCTTGTGTCAAAAAGGGAGGATTAAGATTCACCATCAATGGCCACTCCTACTTCAACCTGGTTCTGATCAGCAACGTTGCAGGTGCAGGGGATGTCCATGCAGTGTCCATCAAAGGATCTAGAACTGGTTGGCAACCAATGTCAAGGAACTGGGGCCAAAACTGGCAGAGCAACTCCTACCTCAATGGGCAAAGCCTCTCTTTTCAAGTCACAACCAGTGACGGTCGAACTGTGACAAGCTACAATGTGGCACCAGCCAATTGGCAGTTTGGTCAGACTTTTCAAGGGGGGCAATTTTAG 873 0.4868 MRLIKVGRKTVGEACAGVRPTGLTVGNPARTSACAFDLSLVFSVSLMLLVLLFINMHLQHATADYGGWQSAHATFYGGGDATGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACYEMRCNDDPRWCKPGSIIVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPITFRRVPCVKKGGLRFTINGHSYFNLVLISNVAGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYNVAPANWQFGQTFQGGQF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2882 290 PANTHER EXPANSIN-A15 47 290 IPR002963 GO:0009664
Glsi10g2882 290 Pfam Lytic transglycolase 103 188 IPR009009 -
Glsi10g2882 290 FunFam Expansin 198 290 - -
Glsi10g2882 290 SUPERFAMILY Barwin-like endoglucanases 49 216 IPR036908 -
Glsi10g2882 290 FunFam Expansin 57 194 - -
Glsi10g2882 290 PRINTS Expansin signature 98 112 IPR002963 GO:0009664
Glsi10g2882 290 PRINTS Expansin signature 156 173 IPR002963 GO:0009664
Glsi10g2882 290 PRINTS Expansin signature 244 265 IPR002963 GO:0009664
Glsi10g2882 290 PRINTS Expansin signature 137 147 IPR002963 GO:0009664
Glsi10g2882 290 PRINTS Expansin signature 173 186 IPR002963 GO:0009664
Glsi10g2882 290 PRINTS Expansin signature 273 289 IPR002963 GO:0009664
Glsi10g2882 290 PRINTS Expansin signature 197 209 IPR002963 GO:0009664
Glsi10g2882 290 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Glsi10g2882 290 PRINTS Expansin signature 125 136 IPR002963 GO:0009664
Glsi10g2882 290 Pfam Expansin C-terminal domain 200 276 IPR007117 -
Glsi10g2882 290 CDD DPBB_EXPA_N 67 193 - -
Glsi10g2882 290 SUPERFAMILY PHL pollen allergen 195 287 IPR036749 -
Glsi10g2882 290 SMART dpbb_1 103 188 IPR007112 -
Glsi10g2882 290 Gene3D - 198 290 IPR036749 -
Glsi10g2882 290 Gene3D - 53 193 IPR036908 -
Glsi10g2882 290 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 86 198 IPR007112 -
Glsi10g2882 290 PRINTS Expansin/Lol pI family signature 67 82 IPR007118 GO:0005576
Glsi10g2882 290 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Glsi10g2882 290 PRINTS Expansin/Lol pI family signature 181 197 IPR007118 GO:0005576
Glsi10g2882 290 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Glsi10g2882 290 PRINTS Expansin/Lol pI family signature 107 125 IPR007118 GO:0005576
Glsi10g2882 290 PRINTS Expansin/Lol pI family signature 273 287 IPR007118 GO:0005576
Glsi10g2882 290 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 208 287 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2882 Glsi-ChrGlsi10 54837830 54839541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2882 40 290 Expansin Gene Family AT2G40610 78.175 1.22e-146 410
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0470 08 3919201 3921010 Glsi10g2882 10 54837830 54839541 CCT
Glsi10g2882 10 54837830 54839541 Glsi10g2882 10 54837830 54839541 ECH
Glsi08g0470 08 3919201 3921010 Glsi10g2882 10 54837830 54839541 ECH