Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2879 ATGGGGAATAACAGGTTCAAATTGTCAGATATGATCCCAAATGCTTGGTTTTACAAGCTCAAAGACATGAGCAGATCAAGGAAGCAGAATGGTTCTCATGCTATGAAGAACAAGATAACCTCACCAACGACTTCTAAAAGGCCGTCGCAGCCAAGGTATTCCCATTATTTCTTCAATGAACCAAGCAGAGCCGGTAAGTTATACAACTCCCCCATTTTTACCAAAGCCTCAGACATTCCATTCATTGATTCACCAAGAAGGTCTTCTAAGAGAAGGGCCAGGAGAAAAACCATTTACAAACCTTCTCCCGCACTTGTCTCCTCCTCTGTCTCAGCGAGTCTTGGCTGTCATTCCAAAAATAATTGGACTCAGCCAAAGCAAATTCAGTCCCCGGACTGTTATGCCTCCTCCATTGAGAGTTCTTCTGAATCAGAACTCCATGAATCTGTCTTATCTGAGTCTGAGTGTGATAGGTTTGCTGTTCCTGATTTGTTTAATGGGCTAGCCTCAAATTGTAGTTGTAGAGTTAGTTCTTCTACTAATGATATCATCATCGACATGAACAATGAACCTTTAACTGGGAATTCTGAAAAGCTAGATGGGTTTGAAACGATTTCACAGTTAGGTCTTCCTCCAATATTGACAAAGCCAGTAAACTTTGATGAGAAGGTCATTGAGGCCACTGAGTGCAGAAGTTCATCTAAATTGGATAAGCCACAAGATCACCGGTCTCTGTCTGTCAAGAATAGCAAACAGGAAAGCAGTAGAACTCAAAGAGAGCGAAAATCCAGTGCTTCTGCTCGAAAGTCGTCTGCTAATTCTACAGGTATTAGACTGCGAGTCAATTCTCCAAAACTAGCAAGCAGTAAAGCTCGAGCCTCTGCAAGAAGGGGTGTTTCATCCAGTGCAGGCAAAGCTTCAAGGAATACAGGCTTTCCAGAGGGTTTTGCAGTTGTTAAGTCCTCATTTGATCCACAAAGAGACTTCAGGGATTCAATGGTGGAGATGATTATGGAGCATAATATCCAGGCATCAAAGGATTTGGAGGATCTACTTGCCTGTTATCTTTCACTGAACTCAAGTGAATACCACGATCTCATTGTCAAAGCATTTGAGCAAATTTGGTTTGACATGGCTCAACTCAGATTGTAG 1152 0.4219 MGNNRFKLSDMIPNAWFYKLKDMSRSRKQNGSHAMKNKITSPTTSKRPSQPRYSHYFFNEPSRAGKLYNSPIFTKASDIPFIDSPRRSSKRRARRKTIYKPSPALVSSSVSASLGCHSKNNWTQPKQIQSPDCYASSIESSSESELHESVLSESECDRFAVPDLFNGLASNCSCRVSSSTNDIIIDMNNEPLTGNSEKLDGFETISQLGLPPILTKPVNFDEKVIEATECRSSSKLDKPQDHRSLSVKNSKQESSRTQRERKSSASARKSSANSTGIRLRVNSPKLASSKARASARRGVSSSAGKASRNTGFPEGFAVVKSSFDPQRDFRDSMVEMIMEHNIQASKDLEDLLACYLSLNSSEYHDLIVKAFEQIWFDMAQLRL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2879 383 ProSiteProfiles OVATE domain profile. 318 377 IPR006458 -
Glsi10g2879 383 MobiDBLite consensus disorder prediction 33 54 - -
Glsi10g2879 383 MobiDBLite consensus disorder prediction 230 266 - -
Glsi10g2879 383 Pfam Transcriptional repressor, ovate 322 378 IPR006458 -
Glsi10g2879 383 MobiDBLite consensus disorder prediction 267 282 - -
Glsi10g2879 383 NCBIfam uncharacterized plant-specific domain TIGR01568 316 378 IPR006458 -
Glsi10g2879 383 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 226 378 IPR038933 GO:0045892
Glsi10g2879 383 MobiDBLite consensus disorder prediction 230 307 - -
Glsi10g2879 383 MobiDBLite consensus disorder prediction 27 54 - -
Glsi10g2879 383 Pfam DNA-binding domain 1 47 IPR025830 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2879 Glsi-ChrGlsi10 54746866 54748017 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Glsi10g2879 Ovate 2.3e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0466 08 3880775 3885840 Glsi10g2879 10 54746866 54748017 CCT