Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2873 ATGGTGTTAGAGATCGAACATGAGATAGAGGAGAACAACACGTTATTCGGAAAATATGAGCTCGGAAAGCTTCTGGGTTGTGGCGCCTTCGCCAAGGTCTACCATGCCCGCAACCTTGAAAACACCCAAAGCGTCGCCATCAAAATCATCAGCAAAAAAAAGATCACCGGCTCTGGCCTCATGTCTAATATCAAGCGCGAGATTACCATCATGAGCCACCTCCACCACTCCCACATCGTCAAGCTCAATGAGGTGCTCGCCACCAAGACCAAGATCTTCTTCGTCATGGAGTTCGTCAAAGGCGGTGAATTATTCACTAAAATTGCCAAGGGACGCTTTAGCGAGGATCTCAGTCGAAAATATTTCCAGCAATTAATCTCCGCCGTCGGATACTGCCACTCTCGGGGTGTATTCCACCGTGACTTGAAACCAGAAAATCTTTTGCTCGACGACAATGGGAGTTTAAAGGTTTCAGATTTTGGGCTGAGTGCTGTCACGGATCAGATTCGACCCGACGGATTGCTCCATACACTCTGCGGAACTCCGGCATACGTGGCGCCGGAGATTCTGGCAAAGAAAGGTTACGATGGGGCAAAGGTGGATGTGTGGTCGTGCGGCGTCATCCTCTTCGTGTTGACGGCTGGTTACCTACCCTTCAACGACCCAAACCTCATGCTCATGTACAAGAAGATTTACAGGGGGGAATTTCGGTGCCCCAGGTGGATGTCATCGGAGCTCACGCGGTTATTGTCACGGCTACTCGACACGAAGCCCGATACACGGATCACCGTCGCTGAGATCCTACGGGACCCGTGGTTCAGGAAAGGGTACAAGGAGATCAAGTTTCACGATAAAGATTTCGGGTCCGGATCGAGGTTTGGCGAGACGGATAAGATGACCGAACTGAATGCGTTTGATATCATATCTTATTCCTCTGGGTTGGACCTGTCCGGGTTGTTCGATGACGCAGGCAGCGCGGCAGAGAATGGTGAGCGGTTCGTATCGTCGGAATCGCCATGCAAGATAATGCAGACGGTGGAGGAGGTGGCAAATGCGGAGGGGCTGGCCGTGACGAGGAGGAAGGAGTGTGGGATAGTTCTGGAAGGGGAGAATGGTAATTTGGGGATTGAAGTTGAGGTTTACCTGTTAACAGGGGACATGGTAATGGTGGAGGCAAAGAGAAGAGGCATAGACGCTTTGGCCTTCAAGCATGTGTGGAAGAACAAGTTGAGGCCTCAACTCTTGGATTGCGCCGGTGGGGGCACAACTTAG 1272 0.5134 MVLEIEHEIEENNTLFGKYELGKLLGCGAFAKVYHARNLENTQSVAIKIISKKKITGSGLMSNIKREITIMSHLHHSHIVKLNEVLATKTKIFFVMEFVKGGELFTKIAKGRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDDNGSLKVSDFGLSAVTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVILFVLTAGYLPFNDPNLMLMYKKIYRGEFRCPRWMSSELTRLLSRLLDTKPDTRITVAEILRDPWFRKGYKEIKFHDKDFGSGSRFGETDKMTELNAFDIISYSSGLDLSGLFDDAGSAAENGERFVSSESPCKIMQTVEEVANAEGLAVTRRKECGIVLEGENGNLGIEVEVYLLTGDMVMVEAKRRGIDALAFKHVWKNKLRPQLLDCAGGGTT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2873 423 Pfam NAF domain 300 358 IPR004041 GO:0007165
Glsi10g2873 423 Gene3D Transferase(Phosphotransferase) domain 1 99 280 - -
Glsi10g2873 423 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Glsi10g2873 423 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2873 423 CDD CIPK_C 303 414 - -
Glsi10g2873 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Glsi10g2873 423 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2873 423 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 394 - -
Glsi10g2873 423 FunFam Non-specific serine/threonine protein kinase 9 303 - -
Glsi10g2873 423 SUPERFAMILY Protein kinase-like (PK-like) 16 282 IPR011009 -
Glsi10g2873 423 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Glsi10g2873 423 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2873 423 FunFam Aurora kinase A 11 102 - -
Glsi10g2873 423 Gene3D Phosphorylase Kinase; domain 1 7 98 - -
Glsi10g2873 423 Gene3D Kinase associated domain 1, KA1 298 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2873 Glsi-ChrGlsi10 54525238 54526509 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2873 10 415 CBL-interacting serine-threonine protein kinases AT2G30360 64.720 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi10g2873 Pkinase 9.9e-71 CL0016