Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2871 ATGGAGAATAAATCAAATATCTTATTGCAAAGATATGAATTAGGAAGATTACTAGGCCAAGGTACCTTTGCAAAGGTATACTATGCACGAAGTGCAATAACTAATCAAAGTGTGGCTATCAAAGTGATTGACAAAGATAAGGTTATGAAATCTGGGCAAGCCGATCAGGTCAAGCGTGAAATATCTGTTATGAGACTGGTTAGACATCCCAATATTATACAGCTTTATGAGGTGATGGCCACTAAGGGTAAGATTTATTTTGTTATCGAATATGCTAAAGGCGGGGTTCTGTTCAACAAGGTGGCCAAAGGAAAGCTAAAAGAAGATGTTGCTCATAAATATTTTCAGCAGCTAATCAATGCAGTAGATTTTTGTCATAGTAGAGGTGTATACCACCGTGATATAAAGCCCGAGAACCTTTTGTTGGATGACAATGGGAATCTAAAGGTCTCCGACTTCGGGTTGAGTGCTCTAGCTGAATCCAAGTGGCAGGATGGCTTACTGCATACACCTTGTGGCACGCCTGCATATGTTGCTCCTGAAGTCATCAAAAGGAAAGGTTATGATGGGGCCAAAGCTGATATTTGGTCTTGTGGAGTAGTACTGTTTGTTTTATTGGCAGGTTATCTTCCTTTTCATAATTCAAATTTGATAATGATGTATATGAAGATTACCAAGGCAGAATTTAAATTCCCTAATTGGTTCTCTCCTGAAGTACGTAGGCTATTACGCAAGATATTGGATCCAGATCCTGATACTAGGATTTCCATAGCCAAGATTAAAGAATGTTCTTGGTTTATGAAAGGGCCAATTGCCAGACATCAAAAACCTGAATTAGAAAACAAGGCTGTCTCTACTTCAGGTACAAATCCTTCTGATCAAACCGATGGAAGTGATAGTACAGCAGAAGAAGCAAAGCAAGAAGTTGTGCCCAAAAGTATAAATGCTTTTGATATCATCTCCCTTTCTGCTGGTTTTGATCTGTCTGGATTCTTTGAAGAAAGTTTTAAGAAGAGAGAAGCAAGATTTTCTTCAAGACAACCTGCGTCAGTCATTATCTCCAAGCTTGGAGAAATAGCAAAGCGTCTGAGGCTGAAAATAAAGAAAAGAGATGCAGGTCTGTTGAAACTAGAGGGCCGCAAGGAAGGTAGAAATGGGATTTTATCCATTGATGCAGAGATCTTTGAGGTTACTCCATTTTTCCATTTGGTAGAGGTGAAAAAATCAAATGGAGATACATTGGAATTTCAGGACATACTGAAAGAGGATATTAGGCCTGCTCTTCAGGATATTGTTTGGGTTTGGCAAGGTGAGCAGCAGCAAAAGCAATCACAACAGTCAGAGGAACAGCTACATGTTACAGATACATGA 1371 0.3924 MENKSNILLQRYELGRLLGQGTFAKVYYARSAITNQSVAIKVIDKDKVMKSGQADQVKREISVMRLVRHPNIIQLYEVMATKGKIYFVIEYAKGGVLFNKVAKGKLKEDVAHKYFQQLINAVDFCHSRGVYHRDIKPENLLLDDNGNLKVSDFGLSALAESKWQDGLLHTPCGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLIMMYMKITKAEFKFPNWFSPEVRRLLRKILDPDPDTRISIAKIKECSWFMKGPIARHQKPELENKAVSTSGTNPSDQTDGSDSTAEEAKQEVVPKSINAFDIISLSAGFDLSGFFEESFKKREARFSSRQPASVIISKLGEIAKRLRLKIKKRDAGLLKLEGRKEGRNGILSIDAEIFEVTPFFHLVEVKKSNGDTLEFQDILKEDIRPALQDIVWVWQGEQQQKQSQQSEEQLHVTDT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2871 456 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Glsi10g2871 456 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2871 456 MobiDBLite consensus disorder prediction 278 306 - -
Glsi10g2871 456 Pfam NAF domain 311 369 IPR004041 GO:0007165
Glsi10g2871 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Glsi10g2871 456 SUPERFAMILY Protein kinase-like (PK-like) 8 289 IPR011009 -
Glsi10g2871 456 Gene3D Transferase(Phosphotransferase) domain 1 94 286 - -
Glsi10g2871 456 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2871 456 CDD CIPK_C 315 429 - -
Glsi10g2871 456 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Glsi10g2871 456 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Glsi10g2871 456 Gene3D Kinase associated domain 1, KA1 309 434 - -
Glsi10g2871 456 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2871 456 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Glsi10g2871 456 MobiDBLite consensus disorder prediction 281 298 - -
Glsi10g2871 456 Gene3D Phosphorylase Kinase; domain 1 3 91 - -
Glsi10g2871 456 FunFam Non-specific serine/threonine protein kinase 5 308 - -
Glsi10g2871 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2871 Glsi-ChrGlsi10 54405380 54406750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2871 1 444 CBL-interacting serine-threonine protein kinases AT5G58380 68.709 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi10g2871 Pkinase 1.6e-74 CL0016