Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2868 ATGATACCTGGAACAATCAAAAAGGAAAAAGAAGAATGGAAACATAGGAATAGAAACCCTTGTGTAGACGTAGAAAGACAACATGCAGAGGTGGAACAAGTACCAATAAAAGCTGATTATAAGGGGAAGAGCTGGCAGAGTACATCTGAGCAGACTGGGAGAAAGGGAAAAGAAATAGAAGTTATTAGAATTGGGCTGACAAAGCCCAATAGTCAAATGGGCTTCCACAGCCCAGAAGAAGGGAAGAATAAGGGAGGTAAGATAGGGAAACATAATAGGCCATCTTTTACTGGAAAGTCTAATGGGCCAAAAGAAGTAAAAACCCAGGAAAGTAACCTGGAACTAGATAATCCCCCTAACCTAACTGTGGTTATGGGGGAAGGCTGGAAGCAGAACAATGAGAGAATCAGAATAGAAGAATACAACAATGAAAGGCAGAGCTTGCCCTTATTGAACGCCAACTCCTCTGACCCTGAAAGACACGCCCCGTCGCTGTCTGCCCGGCTGCCATACACTGATTTCTGTTCATTCTATCCCCTCTTTCGAGCTGGATCAGCGTCCGCGAAATCAACTGAAAATGGAATGATTTACGGATTGGAACCTCTTTATTCCTTTCTTATCGGATCTACATGCAAGTTTCCTGTTACTGTTGCAGGTTTTATGGAGATATCCTTGTTAAAGGTGCTTGTTAATGGCATGTCCTCATTTTTACATTTATCATTTTCTGGAAACATGGAATCAGAACCTGTCTTGAAGTACTACCAAAAGGCAGAGGAGATACTTAAGTTGTTGAAGCCAATAATTGATGCAATTGCTAATTATGATTTAGCTTCTGATGAAGTACTTTGGAGGATATTTGAAGAATTGCATCAGGTTGTTGAGGAGTTGAGTGAGCTTATTGACAGCTGGCAACTATTATCTAGCAAAGTGTACTTTCAATTGTGGGAACTTGAATTTTGGCCAGGTAGAGCAGTTCAGTCCATTGCAGTCCTACGAAGTTTTACTTCAGAATTCCAATATCTTGATAGAGGTGGTGGTATGGTTATGCAAGTTGAATCCTTGATATCTAGGATTTGGACTTTGGGACTCAATATTTTTCAGCAGCTGCAGGCTGCCCATCAATGTCTCCCTGATGAATTGAGTTCAGCACATGTAGAGCATTGTGTTCAAAAAATGAACCATTTGGGACACGAAGAAGCATCATCTTTCATCAAGGAAGCTATTAGGGAACAAGTGGAAGGTGTAGGACCTAGTTCAGAGGTTCTGGCAAAAATTGCTGAGAACCTGGGCTTGAGATCTAACCAGGAGGTTCTGATTGAGGCTGTGGCCCTCAAAAAGATGAAGGAGAATGCTGAACAAACTGAAAAGATTGCAGAAGCTGAATATATTGACCTAATAATTGCTCTTGTAACTTGTATGCATGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGCTGTAGCCCAGTTCCAGTACCTCCCGATTTTTGTTGTCCTCTCTCTTTGGAGTTGATGACGGATCCAGTGATTGTGGCATCAGGGCAAACTTATGAGCGGGTTTTCATCAAGAATTGGATTGATCTGGGGCTTACTTTTTGTCCAAAGACATGTCAGACTCTGGCTCACACGAACCTAATACCTAATTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTCAAGCTGGTTGATCCTACAAAGTCCTCAGACTTAAATCAAGCATCTTCCCTTCATGGGTATATTGATTCTGGTGCAACCAGGGTTTTGCCTGTTTTAGGTCATTCCAGGGGTAACCATTCATCCTCACCAGAGCTGGGTTCGTCACCATTGCATCCCTATTCAACTTCAGAAGATTCCTTAAGTGGCATAACTAATGGACAATGCTTGGATATTGCAAGAATATCGCCAACAGGTTCTGATGACATGTCTGCTAGCTCAGACGAAAGAAGTGCGGATTCAGTTGGCCAACACTCAATATCACCATCTAGAAGGGAATGTTTCATTGCCTTCAGCTCAGAACGATCTCAAACCCATGTTAGAACTGCTTCTGACAGTCAACTTTCTAGTGAAAATTTTCCTCAAGGAACACAAGGTGATGATAACAGTGCTTCTCAGCCATCAGACGATACAGGTTACAGTAGGATTGCTTCTGGGGAGCTAAATCAAGGGCCAGATACTGCTGATGCTGCTACCTTGAATACTCCTCAGAGAGAACCTGAGGTCTCACCTCGATTTGTCGAGATGAGGTCTCGAAGCCAAAGCATATGGGGGCGGCCATTAGAGAGGTTTGGTCCTAGGAGGACATCTGCTCCTGCTGTTGAAACTAGAGCTGATCTTTCTGGTATTGAAACTCAGGTTCGAAATTTGGTTGAAAACTTGAAAAGCTCTTCTCTTGATACTAAGAGAGAGGCAACAGGTGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATAGAATTGTGATTGCAAACTGTGGAGTTATTAGCTTATTAGTTGACCTACTCCAATCAACTGATCCGAGAATTCAGGAAAATGCTGTTACAGCACTTCTCAATTTATCAATCAATGATAATAACAAAACTGCTATTGCAAATGCTGGTGCAATTGATCCTCTGATTCATGTCCTTGAGACAGGAAGTCCTGAAGCCAAAGAGAATTCAGCTGCCACGCTTTTTAGCTTATCGGTGATTGAAGAAAACAAGATCAGGATAGGAAGGTCTGGGGCAATTGGGCCACTGGTTGATTTATTAGGGAGTGGAACACCTAGGGGGAAGAAAGATGCTGCCACAGCTTTGTTTAATCTGTCAATATTTCATGAAAACAAGGGTCGGATTGTACAAGCTGGTGCTGTGAAGCATCTTGTGGAATTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTTTTAGCCAATCTTGCTACAATTAAAGAAGGAAGAACTGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAATTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCAGCTGCTCTTCTACATCTTTGCTCAAACAGTACCAGATTTTTAATCATGGTGCTCCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGACTCTGGTTATACTCTTCGTACTAGGATAATTTTTACACAGGCAAGGCAACGATCTAGCATTCAACGCTTGGACGGGCAGCATTTCATTGAAGCAATGTCGATGCTGATGGACTTTGAGATTGTATTTTGCTTGATCTTTTACTACATGGCCTGCACACCTTGCATCTATTACTCTCATTTGAAGACCTTAAGTTTTACTGTGCCTTTGTGCTTGGGATGTCATGTCAATTTTGCTGAGGAAGCTAAGATGTTTGGGAATTCTCCTTTAAAGAAGGAAGAAGATATCATCATGGACGACCTTGAAGCTAAATATTTGGCCAATGCTAGTAATAACATGAGGGAGGAGGTTGAGGGAAGAGAGTCACGTTTTACTTTGCTAGCCGCTCAAGAAGATCTCGAAAATGGCAGGATAGATGTTTCTGGCGAAAAAGACTTAGATGCCGTTTTGAGTTGA 3615 0.4254 MIPGTIKKEKEEWKHRNRNPCVDVERQHAEVEQVPIKADYKGKSWQSTSEQTGRKGKEIEVIRIGLTKPNSQMGFHSPEEGKNKGGKIGKHNRPSFTGKSNGPKEVKTQESNLELDNPPNLTVVMGEGWKQNNERIRIEEYNNERQSLPLLNANSSDPERHAPSLSARLPYTDFCSFYPLFRAGSASAKSTENGMIYGLEPLYSFLIGSTCKFPVTVAGFMEISLLKVLVNGMSSFLHLSFSGNMESEPVLKYYQKAEEILKLLKPIIDAIANYDLASDEVLWRIFEELHQVVEELSELIDSWQLLSSKVYFQLWELEFWPGRAVQSIAVLRSFTSEFQYLDRGGGMVMQVESLISRIWTLGLNIFQQLQAAHQCLPDELSSAHVEHCVQKMNHLGHEEASSFIKEAIREQVEGVGPSSEVLAKIAENLGLRSNQEVLIEAVALKKMKENAEQTEKIAEAEYIDLIIALVTCMHERLVMLKQAQSCSPVPVPPDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLTFCPKTCQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSSDLNQASSLHGYIDSGATRVLPVLGHSRGNHSSSPELGSSPLHPYSTSEDSLSGITNGQCLDIARISPTGSDDMSASSDERSADSVGQHSISPSRRECFIAFSSERSQTHVRTASDSQLSSENFPQGTQGDDNSASQPSDDTGYSRIASGELNQGPDTADAATLNTPQREPEVSPRFVEMRSRSQSIWGRPLERFGPRRTSAPAVETRADLSGIETQVRNLVENLKSSSLDTKREATGELRLLAKHNMDNRIVIANCGVISLLVDLLQSTDPRIQENAVTALLNLSINDNNKTAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIRIGRSGAIGPLVDLLGSGTPRGKKDAATALFNLSIFHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIKEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSNSTRFLIMVLQEGAVPPLVALSQSGTPRAKEKDSGYTLRTRIIFTQARQRSSIQRLDGQHFIEAMSMLMDFEIVFCLIFYYMACTPCIYYSHLKTLSFTVPLCLGCHVNFAEEAKMFGNSPLKKEEDIIMDDLEAKYLANASNNMREEVEGRESRFTLLAAQEDLENGRIDVSGEKDLDAVLS 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2868 1204 MobiDBLite consensus disorder prediction 94 118 - -
Glsi10g2868 1204 MobiDBLite consensus disorder prediction 594 624 - -
Glsi10g2868 1204 Pfam U-box domain 491 561 IPR003613 GO:0004842|GO:0016567
Glsi10g2868 1204 ProSiteProfiles U-box domain profile. 490 564 IPR003613 GO:0004842|GO:0016567
Glsi10g2868 1204 FunFam RING-type E3 ubiquitin transferase 490 565 - -
Glsi10g2868 1204 MobiDBLite consensus disorder prediction 636 663 - -
Glsi10g2868 1204 FunFam RING-type E3 ubiquitin transferase 772 1064 - -
Glsi10g2868 1204 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 911 953 IPR000225 GO:0005515
Glsi10g2868 1204 SMART arm_5 941 980 IPR000225 GO:0005515
Glsi10g2868 1204 SMART arm_5 818 858 IPR000225 GO:0005515
Glsi10g2868 1204 SMART arm_5 981 1021 IPR000225 GO:0005515
Glsi10g2868 1204 SMART arm_5 900 940 IPR000225 GO:0005515
Glsi10g2868 1204 SMART arm_5 859 899 IPR000225 GO:0005515
Glsi10g2868 1204 CDD RING-Ubox_PUB 492 544 IPR045210 -
Glsi10g2868 1204 SMART Ubox_2 494 557 IPR003613 GO:0004842|GO:0016567
Glsi10g2868 1204 Coils Coil 434 461 - -
Glsi10g2868 1204 MobiDBLite consensus disorder prediction 66 125 - -
Glsi10g2868 1204 PANTHER U BOX DOMAIN-CONTAINING 249 1055 - -
Glsi10g2868 1204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 490 565 IPR013083 -
Glsi10g2868 1204 MobiDBLite consensus disorder prediction 677 752 - -
Glsi10g2868 1204 SUPERFAMILY RING/U-box 483 568 - -
Glsi10g2868 1204 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 829 871 IPR000225 GO:0005515
Glsi10g2868 1204 Pfam Armadillo/beta-catenin-like repeat 820 857 IPR000225 GO:0005515
Glsi10g2868 1204 Pfam Armadillo/beta-catenin-like repeat 859 898 IPR000225 GO:0005515
Glsi10g2868 1204 Pfam Armadillo/beta-catenin-like repeat 902 939 IPR000225 GO:0005515
Glsi10g2868 1204 MobiDBLite consensus disorder prediction 598 624 - -
Glsi10g2868 1204 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 952 993 IPR000225 GO:0005515
Glsi10g2868 1204 MobiDBLite consensus disorder prediction 1 26 - -
Glsi10g2868 1204 MobiDBLite consensus disorder prediction 677 741 - -
Glsi10g2868 1204 SUPERFAMILY ARM repeat 789 1051 IPR016024 -
Glsi10g2868 1204 Gene3D - 775 1065 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2868 Glsi-ChrGlsi10 54207256 54225494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2868 820 947 U-box Gene Family AT2G23140 35.795 8.54e-13 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0454 08 3795379 3799971 Glsi10g2868 10 54207256 54225494 CCT