Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2854 ATGACCACTTCCATCTCTGACCTTCTTGCTTCTCCCATCAATGAAAACCCTGACACCGCCGTCGATGTGCCCCGTGGGTTGTCCCATCGTATAGCGGAGCGAACTGGGTCGGGTGTACCGAAATTCAAGTCCATCCCACCTCCATCTCTTCCTCTGTCTCCGCTTGCCGTTTCTCCTTCATCTTATTTTGCTATCCCTGCTGGGTTGAGCCTCGCAGAGCTTCTGGACTCTCCGGTTCTCCTTAATACTTCAAATATTCTGCCATCTCCAACAACTGGAGCCCTTGCTGCTCAAGCCTTCAATTGCAAGAGCAATTCTGGGGAAAGCCAGCGAAATATAAAGGAAGAAGAGAAAAACTTTACTAGTTTCTCTTTCCAACCGCAAGCAAGACCTCCTCTTCCATCCACAAACACGTTTCATCCTTCAGCTGCTACAATCCAAACGCAACAGGCATGGACGTTTGAAGAAGCCACAAATCAAGATAGTTTTTCTTCAGAAAACTGTATGGTGGTAAAAACTGAAAACGCTTCAATGCAAAGCTTCTCCCCTGAGGTAACGAGTGTCCAAACTAACCATAACAGTGGGTTTCAATCGGATTATAGCAATTACCACTCACAATCTCAGACCTTAAACAGAAGGTCAGATGACGGGTACAATTGGAGAAAATATGGGCAAAAACAAATGAAAGGAAGCGAAAATCCAAGAAGTTACTACAAATGCACATACCCCAATTGCCCAACAAAAAAGAAGGTTGAGAGGTCTTTGGATGGGCAAATTACTGAGATAGTTTACAAGGGTACCCATAACCATCCCAAGCCTCAGTCTACTAGGAGGAACTCATCATCTGCATCTTCTTATGTAATTCCTCCTTCAAATCCTGTCAGCGCCGAAATCCCGGATCAATCATTTGCCACCCATAACAGCGAACAAATGGATTTGGTTGCAACACAGGAGAACTCATTAATATCAATGGGAGATGATAACTATGATCAGAGTTCCCAGAAGATTAAATCAGGAGGAGATGATGTTGATCACGAAGAACCTGATGCCAAGAGATGGAAATTGGAAGGTGAAAATGAGGGTATGTCAGCACCTGGAAGTAGAACAGTGAGAGAACCCAGAATTGTAGTCCAGACAACCAGTGACATAGACATTCTAGATGATGGTTACAGATGGAGGAAATACGGGCAGAAAGTAGTCAAGGGCAATCCAAACCCAAGGAGTTACTACAAATGTACATACCCAGGATGTCCTGTAAGAAAGCACGTAGAGCGAGCCTCACATGACCTCAGGGCAGTGGTCACTACCTATGAGGGAAAGCATAATCATGATGTGCCTGCAGCCCGAGGCAGTGGCAGTCATTCTGTTAATAGACCTATGCCAATCAATACCCCAAACATAAAAAATTCAGTCATTGCCATAACGTCCTCCAATGTGACTCACCACACTGACAATCACATTCACAATTCTCTTCAGAGTTTTAGACCACCCGTACCAGAAGGGCAATCATCGTTCCACCTAGAGATGTTGCAGAACCCAGGAAGTTTTGAATTCTCGGGGTTTGGGAATCCAATGGGGACTTCCATGAATCAGGAACCACTATCTGACAATGTGTTATCTTCGAGAACCAAGGAGGAGCCCAGAGATAATGACATATTTCTTGATTCTTTTCTATACTGA 1680 0.4452 MTTSISDLLASPINENPDTAVDVPRGLSHRIAERTGSGVPKFKSIPPPSLPLSPLAVSPSSYFAIPAGLSLAELLDSPVLLNTSNILPSPTTGALAAQAFNCKSNSGESQRNIKEEEKNFTSFSFQPQARPPLPSTNTFHPSAATIQTQQAWTFEEATNQDSFSSENCMVVKTENASMQSFSPEVTSVQTNHNSGFQSDYSNYHSQSQTLNRRSDDGYNWRKYGQKQMKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSASSYVIPPSNPVSAEIPDQSFATHNSEQMDLVATQENSLISMGDDNYDQSSQKIKSGGDDVDHEEPDAKRWKLEGENEGMSAPGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTYPGCPVRKHVERASHDLRAVVTTYEGKHNHDVPAARGSGSHSVNRPMPINTPNIKNSVIAITSSNVTHHTDNHIHNSLQSFRPPVPEGQSSFHLEMLQNPGSFEFSGFGNPMGTSMNQEPLSDNVLSSRTKEEPRDNDIFLDSFLY 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2854 559 Pfam WRKY DNA -binding domain 215 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 Pfam WRKY DNA -binding domain 387 443 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 SUPERFAMILY WRKY DNA-binding domain 378 446 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 ProSiteProfiles WRKY domain profile. 215 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 MobiDBLite consensus disorder prediction 264 299 - -
Glsi10g2854 559 MobiDBLite consensus disorder prediction 323 351 - -
Glsi10g2854 559 MobiDBLite consensus disorder prediction 196 214 - -
Glsi10g2854 559 MobiDBLite consensus disorder prediction 196 219 - -
Glsi10g2854 559 SMART WRKY_cls 214 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 SMART WRKY_cls 386 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 MobiDBLite consensus disorder prediction 337 351 - -
Glsi10g2854 559 FunFam WRKY transcription factor 204 274 - -
Glsi10g2854 559 Gene3D WRKY domain 373 439 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 FunFam WRKY transcription factor 33 373 439 - -
Glsi10g2854 559 SUPERFAMILY WRKY DNA-binding domain 213 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 Gene3D WRKY domain 198 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 MobiDBLite consensus disorder prediction 442 464 - -
Glsi10g2854 559 ProSiteProfiles WRKY domain profile. 381 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g2854 559 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 480 IPR044810 GO:0003700
Glsi10g2854 559 MobiDBLite consensus disorder prediction 269 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2854 Glsi-ChrGlsi10 53763211 53765871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2854 39 558 WRKY Transcription Factor Family AT2G38470 43.948 6.37e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi10g2854 WRKY 2.8e-25 CL0274