Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2840 ATGTCTTGTTCCGTTGCCCTCTCCAATTCTCCGGTGTTCTCTCCATCGTCTTCTCTCTTCTGCAACAAATCTTCCATGATCTCTTCATCTCCTGAAGCTCTTTCGTTATCCTTGTCCCACCTCAAACCACCGCCTTCGGCTTCGGCTTGTTCTTCCCCTTCTTCGCCCTCCTCGCCTTTTCGGCTTCGGCTCCCCAAGCCCCCTACTGGGCTTTCCAATTCAGCCTCTGCTTCAACTTTGGCTCCGTCCTCGTCTACCTCGCCAAGCAGCACGTTATTGAAGAGGAAGAGACCCGCAAGGCTTGATATACCCGTTACGTCTCTGACTTTTGGGGCTCCAGCGACGCCGTCGTCAGCGGTTAGAGATGTTATAGAGGTCGAGGGACTTGGATTTTCTGTGTATTGTAAGAGAGGGAGGAGAGAGTACATGGAGGATCGTTATTCTGCTGCCGTCAATCTTCAAGAAGAACCCAAACAGGCTTTCTTCGGCATATTTGATGGGCATGGAGGTGCAAAAGCTGCGGAATTTGCTGCCCATAACTTAGAAAAGAATGTCTTGGATGAAGTAATTAGAAGAGACGAGGATGATATAGAGGAGGCAGTGAAGCATGGTTACCTGAACACAGATTCTGATTTTTTAAAAGAGGATCTCCATGGTGGCTCTTGCTGTGTAACAGCATTGATTAAGAATGGTAACCTTGTTGTTTCCAATGCTGGTGATTGTCGTGCTGTTATTAGCAGGGGAGGTGTTGCAGAAGCCCTCACATCAGATCACCGACCTTCAAGGGAAGATGAAAAGGACAGAATTGAGACTCTGGGTGGCTATGTTGATTTATGCCGCGGCGTTTGGAGAATCCAGGGATCTCTTGCTGTATCTAGAGGGATTGGAGATCGACACCTAAAGCAATGGGTGATAGCTGAACCTGAGACTAAAGTTCTCAGTATTGAACCTGAGCATGACTTTTTGATATTAGCTTCAGACGGATTATGGGATAAGGTTACTAATCAAGAAGCTGTTGATATTGCTCGTCCTCTTTGCATTGGAGGTGATAGACCTCAACCGTTGCTGGCTTGTAAGACGCTTGTAGATTTGTCTGTTTCCCGAGGCTCTCTTGATGACGTTAGTGTTATGCTAATAAAATTGGAGCACTATATTTAA 1158 0.4672 MSCSVALSNSPVFSPSSSLFCNKSSMISSSPEALSLSLSHLKPPPSASACSSPSSPSSPFRLRLPKPPTGLSNSASASTLAPSSSTSPSSTLLKRKRPARLDIPVTSLTFGAPATPSSAVRDVIEVEGLGFSVYCKRGRREYMEDRYSAAVNLQEEPKQAFFGIFDGHGGAKAAEFAAHNLEKNVLDEVIRRDEDDIEEAVKHGYLNTDSDFLKEDLHGGSCCVTALIKNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDEKDRIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVIAEPETKVLSIEPEHDFLILASDGLWDKVTNQEAVDIARPLCIGGDRPQPLLACKTLVDLSVSRGSLDDVSVMLIKLEHYI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2840 385 MobiDBLite consensus disorder prediction 36 59 - -
Glsi10g2840 385 SMART PP2C_4 120 379 IPR001932 -
Glsi10g2840 385 Gene3D - 128 384 IPR036457 -
Glsi10g2840 385 SUPERFAMILY PP2C-like 128 382 IPR036457 -
Glsi10g2840 385 MobiDBLite consensus disorder prediction 36 96 - -
Glsi10g2840 385 ProSitePatterns PPM-type phosphatase domain signature. 161 169 IPR000222 GO:0043169
Glsi10g2840 385 SMART PP2C_SIG_2 141 381 IPR001932 -
Glsi10g2840 385 FunFam probable protein phosphatase 2C 25 123 384 - -
Glsi10g2840 385 ProSiteProfiles PPM-type phosphatase domain profile. 130 381 IPR001932 -
Glsi10g2840 385 MobiDBLite consensus disorder prediction 69 93 - -
Glsi10g2840 385 Pfam Protein phosphatase 2C 131 373 IPR001932 -
Glsi10g2840 385 CDD PP2Cc 130 381 IPR001932 -
Glsi10g2840 385 PANTHER PROTEIN PHOSPHATASE 2C 86 379 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2840 Glsi-ChrGlsi10 52908712 52910825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2840 1 385 PP2C-type Phosphatase Gene Family AT2G30020 65.152 7.18e-177 496