Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2808 ATGACGTCACCACATATGTCTTCGCCGGCGGTGGCTACTGCCATAAAATCTATCAACCGTTCACTTTCAGAGCTCTGTGAACACCAACACCACCACTCATTCGAGAACCCTCGAAAATTCTCGGGCTTGGCCCAGCGTCTTCAGCTTGTCGTCAATCAATTACTCCTCTCATTGCAATCACCATCGCCGGAGACACTCCCGGCGTCGGTCCAGACCGCCCTGAAAGGAGTGTCTGGGGCTCTGTCCAAGGCTGCAGAAATTGTTTCCATTTATGAGAAAAGCACCAAGATATTCGTCTTGATCAACTGCAAGTCCCTCTGCTCGTCCCTTCATGAACACACTGTCTCCATAGGAGGATGGCTCGCCTTGCTCGATTCGGCTCTTCAAGACTACCCTGACCTTCGCAAGAAGGCTTCTGATCTCTCCAGTGACATGAAGCTTGCACAGTTCAGAGTCACAGAGAACGAGGATAGAGTGCAATATACACTGGAAAAAGAAGGGCAAGAAAGACAGACAAGCAAGGCAGTGCAGAGTGCTATTCTCATGGATTTGGCTCGTGCTTTGGGGATTGATCCAGATGATCATACAGAGTTGTCAAACCAAATAACGCTCTTCAAGAATGACGTCTTGCGCTCAAATTCTGTATCGGAGCGGCGGATTTTAGTTTCCTTAGAAAGGATTTTGAATAACTGGTCCATTGAGCCTAACATTGTGACTCGAAATTTGGATTTTGACCTTCAAGACGATGCCCCTATTTCTCCCTTCAAAAATTTTCTTTGCCCACTGACCAAGGAAGTGATGAAGGATCCTGTGGTGCTGGAATCGTCTCAGACCTATGAACGGACTGCTATAGAGTACTGGTTTGAGAGGTGTATTGAGGATGGCCGAGATGCAACTTGTCCTGTCACCGGGAAGGTTCTCAAGTCCTTGGAGCTGAAACCCAATATTGGATTAGCTGGGGCAATTGACGAGTGGGTTATCAGGATTGTTGAGTATCAAGTCAAATCTGCCATGGAGCACTTGAACGAAGAACCACTGTCTATTGATCACGTTGAGCGAGCGCTGGATAGCATTTATAAGGTTTCAGAAGAGCATTCCACTAGCAGATATATTATCAGGAATGCTGGCATTGTACAGCTGATAGTGAAGGTGCTTAGTGATAGCTCAAAAACTATTGGATCACGTTTGAGAAGCAAAGCTTTAATGACTTTAGTTAGCATGGCCAACGATGAAGAAAGCAGGAAAATAATGCTTGAAGGGGGTATCACTAGATTGGCCGTAAATAGCCTTATTGGGAGCTCGGAGAAAGAGAGAGAACATGCTGTCAAGTTATTACAAGAGTTATCCAGCGATGAAGCTTGTTGCATAAGAATTGCATCAGAGAAAGGTGCATTAGTGCTTCTCTCAAGTATGGCAGCAAATATGGAGTATCCTGCTCTGTCCAACTTAGCAGAGGAAGTCTTAAGACAGATGGAGAGGGTGGATGATAATGTGCAACGTTTAGCAGCAGCTGGAAGATTTGAACCATTACTTTCACGGTTATGTGATGGTTCTGATGATGTAAAGATAGAGATGGCTTCTCTGGTTGGGAGGATGACCTTGACAAATAGCAGTAAAGAACAAATTGCTAGGCGAAGTGCTGGAGTACTTGTTGAACTGTTGTCAAAGCCAGAAGGAAGGGGACCAAGTTTGCAAGCATTATATAACTTGTCAGGATTGGATGACAATGCAACCATCCTTGTTGAGTCTCCAGTCTTTCCGTCTCTTATAGAAGTTCTTTTTGGTGACCATGATCCTTCAAATGAGTTGAAATCATTAGCTGCTTCAACTATTGCAAATATAGTATCAAAGCCAGGGCGTTGGGAATTAGCATCTGCTGACAAGAAGGGGAATTCAATGCAGTCAGAAAATATTGTTTTCGGACTTTTGCAGCTTTTAAACTCTCTGTCGTCTCAATGTCAAGTATATGTTCTCCGTATTCTTTATGGAATTGCATCATCTCCCCAGGCATCAGAGTTAGTAGCCTTGCACATAAAGGCTGGGAATGGCTTTAGAACGGTCATACCATTTCTTGAACACTCAGAAGTTGAACTCAGAATATATGCTTTTAAGTTTATGAGACTGCTATCAGAATCGTGCAATCAAGATCTAGGAAATGAGTTGAGACTTTCCCACAAGCTGACCATACTCAAAGAAAAACTGTTAGATAACCAATCTACAGAAGATGAGAGATCAAATGCGGCATGTATACTGGCCAACCTTTCCCTCTCAGAAAATGAAGTCAAGTCACTTTTAGGAGGTGATTTTGTGGGATGGATTGTCATCACTCTGAAGAACCAGAGACGCAGCTCCAATGCAAGGATTTCTCAAACAGAATCAAGCATGCTGGAAGGTCTTCTTGGTCTCTTACTTCAGTTCACTAGGAACCTTGATGAGCAAACTCTTAATGTTGTTAGAGAAAATCGTCTTATGACAATTTTCTGTGAACAGCTGGATTATACTTCCAAACCAAAGGTAAGAAGACTTGCTGCCTCTGGATTGAAAAGCTTATCAGAAATTGGAAGGTCAGTTATCACTAGGGACTCTGAACCGCCGCCTTCTCATGGGTTCTGCTCTTCCTTGGTGTTCATCTGTGGGAGGACCCCTTCACAGCCTTCCACATGTCCCATTCACAACAGTCGCTGTGAGGAAGATAGTCAGCTGTGCCTGCTCAAGAGCAACTGTATCAAGCCCCTTGTTGATCTTCTCAATGATAATGACACTAGTGTTCAAGTTGCTGCAGTTGAGGCACTTTCTACGCTACTATTAGATTATACATCTAACAGTTTCAAGAGAGCAGTTGATGAGCTTGAGCAACTGGGCGTGGTTGATTCTGTGATCACTCTTTTCACAGAGGTTAGACCTGGAGAGCTTCAGGAGAAGACGATTTGGATCATAGAGAAAATTTTGAGAGTGGAAAATCACACTCATAAGCACTCACTGAATCAATCTCTTGTAAGAGGCTTGGTCGAAGCCTTTAAGCACGGGAATACCAACTGCAAGAGGCATGCGCAAGATGCGCTAACGCACCTAAAGCAAATATCAGGGGTTAGTGGAAAGACATCAAGTCAAACTCGAGCTCAGAGGTAG 3129 0.4404 MTSPHMSSPAVATAIKSINRSLSELCEHQHHHSFENPRKFSGLAQRLQLVVNQLLLSLQSPSPETLPASVQTALKGVSGALSKAAEIVSIYEKSTKIFVLINCKSLCSSLHEHTVSIGGWLALLDSALQDYPDLRKKASDLSSDMKLAQFRVTENEDRVQYTLEKEGQERQTSKAVQSAILMDLARALGIDPDDHTELSNQITLFKNDVLRSNSVSERRILVSLERILNNWSIEPNIVTRNLDFDLQDDAPISPFKNFLCPLTKEVMKDPVVLESSQTYERTAIEYWFERCIEDGRDATCPVTGKVLKSLELKPNIGLAGAIDEWVIRIVEYQVKSAMEHLNEEPLSIDHVERALDSIYKVSEEHSTSRYIIRNAGIVQLIVKVLSDSSKTIGSRLRSKALMTLVSMANDEESRKIMLEGGITRLAVNSLIGSSEKEREHAVKLLQELSSDEACCIRIASEKGALVLLSSMAANMEYPALSNLAEEVLRQMERVDDNVQRLAAAGRFEPLLSRLCDGSDDVKIEMASLVGRMTLTNSSKEQIARRSAGVLVELLSKPEGRGPSLQALYNLSGLDDNATILVESPVFPSLIEVLFGDHDPSNELKSLAASTIANIVSKPGRWELASADKKGNSMQSENIVFGLLQLLNSLSSQCQVYVLRILYGIASSPQASELVALHIKAGNGFRTVIPFLEHSEVELRIYAFKFMRLLSESCNQDLGNELRLSHKLTILKEKLLDNQSTEDERSNAACILANLSLSENEVKSLLGGDFVGWIVITLKNQRRSSNARISQTESSMLEGLLGLLLQFTRNLDEQTLNVVRENRLMTIFCEQLDYTSKPKVRRLAASGLKSLSEIGRSVITRDSEPPPSHGFCSSLVFICGRTPSQPSTCPIHNSRCEEDSQLCLLKSNCIKPLVDLLNDNDTSVQVAAVEALSTLLLDYTSNSFKRAVDELEQLGVVDSVITLFTEVRPGELQEKTIWIIEKILRVENHTHKHSLNQSLVRGLVEAFKHGNTNCKRHAQDALTHLKQISGVSGKTSSQTRAQR 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2808 1042 ProSiteProfiles U-box domain profile. 253 332 IPR003613 GO:0004842|GO:0016567
Glsi10g2808 1042 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 1032 - -
Glsi10g2808 1042 CDD RING-Ubox_PUB 258 312 IPR045210 -
Glsi10g2808 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Glsi10g2808 1042 Gene3D - 871 1034 IPR011989 -
Glsi10g2808 1042 Gene3D - 329 854 IPR011989 -
Glsi10g2808 1042 Pfam Armadillo/beta-catenin-like repeat 902 934 IPR000225 GO:0005515
Glsi10g2808 1042 SUPERFAMILY ARM repeat 370 1022 IPR016024 -
Glsi10g2808 1042 Pfam U-box domain 257 326 IPR003613 GO:0004842|GO:0016567
Glsi10g2808 1042 SUPERFAMILY RING/U-box 250 328 - -
Glsi10g2808 1042 SMART arm_5 895 936 IPR000225 GO:0005515
Glsi10g2808 1042 SMART arm_5 537 572 IPR000225 GO:0005515
Glsi10g2808 1042 SMART arm_5 573 616 IPR000225 GO:0005515
Glsi10g2808 1042 SMART arm_5 410 450 IPR000225 GO:0005515
Glsi10g2808 1042 SMART arm_5 365 409 IPR000225 GO:0005515
Glsi10g2808 1042 SMART arm_5 810 852 IPR000225 GO:0005515
Glsi10g2808 1042 Coils Coil 484 504 - -
Glsi10g2808 1042 SMART Ubox_2 257 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2808 Glsi-ChrGlsi10 51423571 51431259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2808 255 1032 U-box Gene Family AT1G76390 30.740 4.03e-93 313