Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2801 ATGTTAATTGAGCAGAGCAAGAGATGGCGAATACGACTTCGCTCCTTGTGGATCCTTGTCCTCTTTGGAACCATTTCTCTCATTCAGGCCAAGAAGTCGAAGGAGGATTTGAAGCAAGTGACAAACAAGGTTTACTTTGACATTGAGATTGATGAGAAGCCAGCTGGTCGTCTTGTAATGGGTCTCTTCGGGAAGGCAGTTCCTAAGACTGCAGCTCTCTGCACAGGGAAGAAAGGAATTGGAAAAAGTGGAAAAGCTCTTCATTACAAGGGTAGCACATTCCATAGGATTATTCAAGGAGGTGACTTTACTCATGGCAATGGAATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGGGAACTTCAAGTTAAAACATACTGGACCAGGACTTTTGTCAATGGCAAACGCTGGTCCTGATACCAATGGTTCGCAGTTCTTCATTACAACGGTGACTACTAGCTGGTTGGATGGAAGACACGTTGTGTTTGGAAAAGTGCTTTCTGGAATGGATGTGTTTTACCAGATTGAAGCTGAAGGAAGTCAAAGCGGCACTCCCAAGAGCAGGGTTGTGATTGCTGATAGTGGTGAACTACCTCTATAG 609 0.4433 MLIEQSKRWRIRLRSLWILVLFGTISLIQAKKSKEDLKQVTNKVYFDIEIDEKPAGRLVMGLFGKAVPKTAALCTGKKGIGKSGKALHYKGSTFHRIIQGGDFTHGNGMGGESIYGEKFADGNFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVFYQIEAEGSQSGTPKSRVVIADSGELPL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2801 202 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 159 IPR002130 GO:0000413|GO:0003755
Glsi10g2801 202 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 77 IPR002130 GO:0000413|GO:0003755
Glsi10g2801 202 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 106 IPR002130 GO:0000413|GO:0003755
Glsi10g2801 202 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 175 IPR002130 GO:0000413|GO:0003755
Glsi10g2801 202 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Glsi10g2801 202 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 43 200 - -
Glsi10g2801 202 SUPERFAMILY Cyclophilin-like 39 200 IPR029000 -
Glsi10g2801 202 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 45 199 IPR002130 GO:0000413|GO:0003755
Glsi10g2801 202 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 45 197 IPR002130 GO:0000413|GO:0003755
Glsi10g2801 202 Gene3D - 29 201 IPR029000 -
Glsi10g2801 202 PIRSF Peptidylpro_ismrse 29 201 IPR024936 GO:0003755
Glsi10g2801 202 FunFam Peptidyl-prolyl cis-trans isomerase 37 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2801 Glsi-ChrGlsi10 51089698 51093014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2801 88 179 U-box Gene Family AT5G67530 48.980 2.06e-20 86.7