Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2785 ATGAATCCGTTAACCCTAGTGAAACGCATTCAGAATATCAATTCGAAAGAAGCTGCTCTGGGCATCGGCGATGAAGCTTCATGGCACGCCAAATACAAAGATTCGGCTTATGTATTTGTAGGTGGCATTCCCTTTGATCTAACTGAGGGTGATCTCCTCGCAGTTTTTGCTCAATATGGGGAGGTTGTTGATGTTAATCTTGTTAGGGACAAAGGAACTGGGAAATCGAAAGGTTTTGCATTTCTTGCGTATGAAGATCAAAGAAGCACAAATCTTGCAGTAGATAATCTGAATGGAGCACAGATTTTGGGTAGAATCATTAGGGTTGATCATGTTACTAAATATAAAAAGAAAGAAGAGGAAGATGAAGAGGCAGAGAGGCAGAAAAGGGAGGCACGCGGTGTATGTCGGGCTTTCCAAAGAGGTGAATGTACTCGTGGAGCTGGCTGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAACACAGGTTGGGGAGCCCTTGAGGATGATAGCTCAAAATGGGGTCATGACAAATTTGAGGGTAAAAGAAAAGAGAAAAAATTTGGCAGCAATCAATCAAATCATATTCCAGAAACCAGAGGCAGAGATTCAGGCTCTAGAGCTGAGGGCAATGAGATGAGATTAGATGGCCAGCCCAAGCGAAGTGATAGGAGAGAAGAGAAGATATTGCAGAGGCACGATGATGATAAATTTGAGGGAAGAGAAAATAATCATAGGAGAGAGGAGAAGAGATCAAGAAGGCATGAATATGAAGAATTTGAGTGTAGGTCAAGAGAAGATCGTGATAGGAGGGAAGATAAAAAAAGACATGGTTATGATGATATGGAGCCTGAGCCAAGAGATCATCATAGGAGGGAAGACACCAGATCAAGAAAGCCAGATGTTGTTGAGTTTGAACCCATGTCTAGAGATTCTGATAGAAGGGAAGAAAAGAGATACAGGAGGCAGGATGACGATTTTGGAAGTAGGTCAAGGGAATATCATAGGGAAGAAAGGGGATCAAAGCGGAACAGTGAATATGAATTTGCATCAAGGTCAAGAGAAGATTATGATAGGAAGCAAGAGAACAGATCATACAGAAATGATACTGATAGATCAGAGCCAAAACTAAGAAATGATTTGGACGGGAGAGAAGAGAAGAGATCAAGAAGGTAA 1176 0.4167 MNPLTLVKRIQNINSKEAALGIGDEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEEAERQKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGALEDDSSKWGHDKFEGKRKEKKFGSNQSNHIPETRGRDSGSRAEGNEMRLDGQPKRSDRREEKILQRHDDDKFEGRENNHRREEKRSRRHEYEEFECRSREDRDRREDKKRHGYDDMEPEPRDHHRREDTRSRKPDVVEFEPMSRDSDRREEKRYRRQDDDFGSRSREYHREERGSKRNSEYEFASRSREDYDRKQENRSYRNDTDRSEPKLRNDLDGREEKRSRR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2785 391 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Glsi10g2785 391 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Glsi10g2785 391 Gene3D - 11 128 IPR012677 -
Glsi10g2785 391 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 264 - -
Glsi10g2785 391 MobiDBLite consensus disorder prediction 170 191 - -
Glsi10g2785 391 Gene3D - 129 200 - -
Glsi10g2785 391 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Glsi10g2785 391 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Glsi10g2785 391 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Glsi10g2785 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Glsi10g2785 391 SMART rrm1_1 37 110 IPR000504 GO:0003723
Glsi10g2785 391 Coils Coil 115 135 - -
Glsi10g2785 391 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Glsi10g2785 391 MobiDBLite consensus disorder prediction 200 391 - -
Glsi10g2785 391 MobiDBLite consensus disorder prediction 163 391 - -
Glsi10g2785 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Glsi10g2785 391 FunFam Uncharacterized protein 127 205 - -
Glsi10g2785 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2785 Glsi-ChrGlsi10 50246893 50265265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2785 13 109 Eukaryotic Initiation Factors Gene Family AT2G36660 27.835 1.48e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2785 10 50246893 50265265 Glsi10g2785 10 50246893 50265265 ECH