Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2768 ATGGAGATCCTCCCCCCTGCACCTTATATTTCCAACGCCAATTGGCTTGTTGAAGAGAACAGGAACACAAAATGGACTCCTGCTGAGAACAAACTGTTTGAAAATGCTCTTGCAGTATATGATAAGGATACCCCAGATCGGTGGCAAAATGTGGCTGCAATGATACCAGGAAAGACGGCTGGGGATGTCATCAAGCAGTACGAAGAATTAGAAGTAGATGTCAGTAATATAGAAGCTGGGTTGATATCAATTCCTGGCTATAGTACTACAACCTCACAGTTCACCTTTGACTGGATGAACACTCCTGGGTACGATGGTTTTAAGGGACAGGGTGGAAAGAGATCCTCATCAGGGCGACCTCCTGAGCAAGAAAGGAAGAAAGGAGTTCCATGGACTGAAGAGGAGCATAAACTGTTTCTACTGGGTCTGAAGAAGTATGGCAAAGGTGATTGGAGAAATATCTCGCGCAATTTAGTTGTTACTCGAACCCCAACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATCAGGCAACTATCAGGAAGCAAAGACAAGAGGAGAGCAAGCATCCATGACATAACAACAGTTAGTCTCGCAGAAACCACCAGAACACCGTCTCCTTCAGAAGACTACAAGAGATCCACTTCACCCCAGCATTCCATGATCCTCTCGAAGCAGCAGTGGAATTCCACTGCTAGTACACCTCAAGCACATTTCCAGTGGAATCAGCCAAATGCAGGAGTAGCTATGACTTTCAATCCTGCACATGAAAAAGTGTTCATGTCCCCTTTTGGGGTTAACTCTTATGGGCTTAAAGTTCAGGGCCAAAATCTGCATAGAAGTGCTCTTCCTCTTCATGAATCTTCTTACTTAGGACCTCATACTCCAAACATGGTTTTTCAAATGCAATCCACCCAACACCTTTCCCATGCATGA 936 0.4509 MEILPPAPYISNANWLVEENRNTKWTPAENKLFENALAVYDKDTPDRWQNVAAMIPGKTAGDVIKQYEELEVDVSNIEAGLISIPGYSTTTSQFTFDWMNTPGYDGFKGQGGKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNLVVTRTPTQVASHAQKYFIRQLSGSKDKRRASIHDITTVSLAETTRTPSPSEDYKRSTSPQHSMILSKQQWNSTASTPQAHFQWNQPNAGVAMTFNPAHEKVFMSPFGVNSYGLKVQGQNLHRSALPLHESSYLGPHTPNMVFQMQSTQHLSHA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2768 311 Gene3D - 17 84 - -
Glsi10g2768 311 SMART sant 21 73 IPR001005 -
Glsi10g2768 311 SMART sant 127 177 IPR001005 -
Glsi10g2768 311 SUPERFAMILY Homeodomain-like 124 178 IPR009057 -
Glsi10g2768 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 179 IPR017930 -
Glsi10g2768 311 CDD SANT 130 175 IPR001005 -
Glsi10g2768 311 ProSiteProfiles Myb-like domain profile. 123 175 IPR001005 -
Glsi10g2768 311 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 247 IPR043363 -
Glsi10g2768 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 126 178 IPR006447 GO:0003677
Glsi10g2768 311 ProSiteProfiles SANT domain profile. 131 179 IPR017884 -
Glsi10g2768 311 CDD SANT 24 70 IPR001005 -
Glsi10g2768 311 FunFam transcription factor MYB1R1 129 180 - -
Glsi10g2768 311 Gene3D - 129 179 - -
Glsi10g2768 311 SUPERFAMILY Homeodomain-like 21 70 IPR009057 -
Glsi10g2768 311 FunFam Transcription factor SRM1 17 84 - -
Glsi10g2768 311 MobiDBLite consensus disorder prediction 107 130 - -
Glsi10g2768 311 Pfam Myb-like DNA-binding domain 130 175 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2768 Glsi-ChrGlsi10 49910702 49911955 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g2768 Myb_DNA-binding 1.2e-12 CL0123