Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2761 ATGGAATTTGAGGATGACTTTTACAGCGGCGAGGAGGAGGAGGACACGGCCTTGTACAGTGACAATAGCGACGCGGCAGATTTCGACTTCATCGACAACGATTCCTATGGTCCTGAGGAAAACACTGCCTGGAATCGGCACCCCATGCAAAACTATACTGTCTTGAGCGTAAACGACATTCGTCAACGTCAAGAAGAAGATGTTACGAAGATATCATCTGTGCTTTCTATTCCGACTTATGCAGCCAGTATCCTGCTTCGCCACTATAATTGGAATGTTGGTAAAATACATGAAGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGTGCTGTGGGTTTGTTGGATAAACCTGGTGTGGAAGATACAAATGATAGTGAGCTGAAATGTGCTGTCTGTTTTGATACCTATTCCGGAAATGAGATACTAGATGCTGGTTGTGGCCATCCTTTTTGTAGCTCATGCTGGTCAGGTTATATTAGAGTAGCCATCAATGATGGTCCTGGATGTTTGTTGTTGCGATGTCCTGATCCATCATGCTGTGTTGCTGTTGGTCAAGATATGATTAATTTATTGGCTTCTGATGAAGAGAAGGAGAAGTACTCTTCTTATTTTGTTAGATCTTATATTGAGGAAAACAGAAAGACAAAATGGTGTCCTGCTCCTGGCTGTGATTATGCTGTTGACTTTGTTGTTGGTTGTGGAAACTATGATGTTACATGCCACTGCTCATATGGATTTTGCTGGAATTGCACTGAAGAAGCGCATAGGCCTGTTGATTGTGATACTGTGGCCAAATGGATATTGAAGAATAGTGCTGAATCTGAAAATATGAATTGGATATTGGCCAATTCAAAACCTTGTCCAAGCTGCAAGCGGCCAATTGAAAAAAACAATGGTTGTATGCATATGACATGCACCCCACCTTGCAAGTTTGAGTTTTGCTGGCTTTGCCTAGGTGCATGGTCTGAGCATGGTGAGACAACGGGTGGTTTTTATGCATGTAATCGTTATGAAAAAGCAAAACAAGATAAAGTGTTTGCAGAGGCTGAAAAAGAAAAAGAGGTGCTCAAGAACTCTATTGAAAGATATTATCACTATTATGAAAGATGGGTGACCAATCAATCGTCGAGGAAAAAAGCTATCGCAGACCTAGAGCAAATGCAATCTGTGCATAGTAGTGATAACAATTATTTATTGCTGCAGCTCGAGAAGCTCAGTGACATACAGTGTCAGCCTGAGTCACAGCTAAAATTCATAACAGAGGCCTGGTTACAGATTATTGAATGCAGGCGTGTTTTGAAATGGACATATGCATATGGTTACTATATACCTGAGAATGAGAATGCTAAGAGAGAGTTCTTCGAATACTTGCAAGGTGAAGCTGAATATGGATTGGAACGACTTCATCAATGCACTGAGAAGGAACTAGAAGCTTACCTCAATGTTGAGAGTCCAACAGAAGATTTTAACGGGTTTCGCACAAAACTTTCTGGACTAACCAGTGTGACACGAAACTTCTTTGAGAATTTAGTACAAGCATTGGAGAATGGTTTATCAGATGTGAACTCTCACGCTGCATGCAGCAGAACTTTGAGCTCAAAGAGCTCAGGCAGTAGAAGCTCTAATGGGAGAAAAGAGGAGGGGAAGAGTACAACACCCAGAGCAAGTGGTTCCAGAAGTGTTGATGAAGAAGGCCGCTGGATATGTGAGACGTGCTCATATAGGAATTTAGAGTCAAGTACTTACTGTCAACATTGCTGGGAATCTGATCAAGAATCTTGA 1782 0.4164 MEFEDDFYSGEEEEDTALYSDNSDAADFDFIDNDSYGPEENTAWNRHPMQNYTVLSVNDIRQRQEEDVTKISSVLSIPTYAASILLRHYNWNVGKIHEEWFADEEKVRSAVGLLDKPGVEDTNDSELKCAVCFDTYSGNEILDAGCGHPFCSSCWSGYIRVAINDGPGCLLLRCPDPSCCVAVGQDMINLLASDEEKEKYSSYFVRSYIEENRKTKWCPAPGCDYAVDFVVGCGNYDVTCHCSYGFCWNCTEEAHRPVDCDTVAKWILKNSAESENMNWILANSKPCPSCKRPIEKNNGCMHMTCTPPCKFEFCWLCLGAWSEHGETTGGFYACNRYEKAKQDKVFAEAEKEKEVLKNSIERYYHYYERWVTNQSSRKKAIADLEQMQSVHSSDNNYLLLQLEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGYYIPENENAKREFFEYLQGEAEYGLERLHQCTEKELEAYLNVESPTEDFNGFRTKLSGLTSVTRNFFENLVQALENGLSDVNSHAACSRTLSSKSSGSRSSNGRKEEGKSTTPRASGSRSVDEEGRWICETCSYRNLESSTYCQHCWESDQES 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2761 593 CDD Rcat_RBR_ARI7-like 283 337 - -
Glsi10g2761 593 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 52 436 IPR031127 GO:0004842|GO:0016567
Glsi10g2761 593 SUPERFAMILY RING/U-box 124 210 - -
Glsi10g2761 593 ProSiteProfiles Zinc finger RING-type profile. 129 173 IPR001841 -
Glsi10g2761 593 MobiDBLite consensus disorder prediction 1 20 - -
Glsi10g2761 593 SMART ibrneu5 198 260 IPR002867 GO:0008270
Glsi10g2761 593 SMART ibrneu5 264 334 IPR002867 GO:0008270
Glsi10g2761 593 MobiDBLite consensus disorder prediction 529 563 - -
Glsi10g2761 593 FunFam RBR-type E3 ubiquitin transferase 123 212 - -
Glsi10g2761 593 SUPERFAMILY RING/U-box 198 267 - -
Glsi10g2761 593 FunFam RBR-type E3 ubiquitin transferase 261 521 - -
Glsi10g2761 593 SUPERFAMILY RING/U-box 279 327 - -
Glsi10g2761 593 Pfam IBR domain, a half RING-finger domain 277 325 IPR002867 GO:0008270
Glsi10g2761 593 Pfam IBR domain, a half RING-finger domain 198 260 IPR002867 GO:0008270
Glsi10g2761 593 ProSiteProfiles TRIAD supradomain profile. 125 338 IPR044066 -
Glsi10g2761 593 ProSiteProfiles Zinc finger RanBP2 type profile. 563 592 IPR001876 -
Glsi10g2761 593 Gene3D - 256 521 - -
Glsi10g2761 593 CDD BRcat_RBR_ANKIB1 205 269 - -
Glsi10g2761 593 ProSitePatterns Zinc finger RanBP2-type signature. 567 586 IPR001876 -
Glsi10g2761 593 Pfam Zinc finger, C3HC4 type (RING finger) 129 160 IPR018957 GO:0046872
Glsi10g2761 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 208 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2761 Glsi-ChrGlsi10 49692472 49728050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2761 1 586 ARIADNE family AT1G65430 66.099 0.0 795