Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2746 ATGAGTTCCTTCTCCATAACACGGAAAAAGACACCATTCCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCAGAAGATGAGACTGCTCGTTTGTATGCTGAATTTGTTGAGTCATTTCAAGGAGATAGCACTCCTGGGTCAAAGGCCTTTGTCCGTGGAGGAACAATTAATCCCAATGAAAAATTAAAAGCTGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTGTCTGGTCCAAAGAAGGGAAGTAGGTATGTCCCATCTTTTATACCTCCTCCTTTGGCAACCAAGGGGAAAGAATCTGAAAAGAAAAAAGAGGAGGAGAAACCGAAGGAGAAGGAGAAAGGTAAGTCACGGAACATAGATCATTTTATGGAGGAGTTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAACCAAGAACGCGAACACTGGCGTGATGGGCGCCATGTGGAACATTCTACTTCCAGTCGATTTGACGAACTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTCTATGTTGGAAATCTCTCACCAAAGGTTGATGAAAATTTTCTTCTCCGGACTTTTGGAAGATTTGGACCTATTGCCAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAGCGAAGGCGTCAAAGAAACTGTGGCTTTGTAGCTTTTATGAATAGAGCTGATGGACAGGCTGCTAAGGATGAAATGCAAGGAGTGGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGCAAGTCTGTTGCTCTCCCATCGCAAGCACTGCCTGCACCCCCACCAGGGCATATGGCCATAAGGAGTAAGGAGGGTAGCACTGTTATCTTGTCTGGTCCTACAGGTCCTCCAGTAACTTCTGTGCCAAATCAGAATTCTGAACTGGTTCTTACTCCTAATGTCCCTGATATAATGGTTATACCTCCTGAGGATGACCATCTAAGGCATGTAATCGATACTATGGCTTTGTATGTTTTGGATGGAGGATGTGCTTTTGAACAGGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAACATACTTACTATGTTTGGAGACTCTATTCATTTGCTCAGGGTGACACTCTTCTGAGATGGCGAACAGAACCTTTTATCATGATAACTGGTAGTGGAAGATGGATTCCTCCATCTTTGCCAACAGCAAAAAGTCCAGAACATGAAAAGGAATCTGGTTCCACACATGCTGCAGGAAGAAGCAGGCGTGTGGAGCCTGAAAGAACACTGACTGATGCACAAAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACCTTAGAGAGGAGTCAGATAAAAGAGGCTATGGGGTTTTCTTTGGATAACGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCATTGACCCTTAAAGAAACCCCTATTCCTACTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCTGCATATCGCACCAAGTTTGAAGCAACATTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAACAGGGCGTATTACTGCTGAAGCCCTAAAGGAACGAGTTCTAAAAGTTCTGCAAGTGTGGGCCGATTGGTTTCTCTTTTCAGATGCTTATGTGAATGGTTTACGAGCCACTTTCCTTCGATCTGGGAACTCTGGTGTTATACTATTCCATTCCATCTGTGGCGATGCACCTGAAATTGAGAAAAATATCAATTCTGAAGATACAGTTGATGGCAGCAAGAGCAACCAAGATTCTGCATTGGCAATGGGTCGAGGAGCTGCAATGAAGGAGCTAATGTCTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCAGACACAATGGATTGTCGCTTGTTGGTGGTAGAGAAATGATGGTTTCACGGTTGCTTAGTCTGGAGGAGGCAGAAAAGCAGAGAGGTTATGAACTAGAAGATGAATTGAAATATGCTCAAAACCAAGCAAGTTCAGGGAGACATTCAAGTAGTCGGAGAGAAACAAGCATTGAGCCTGAACCAGTGGGTTTCTCTGGATGGAACCATTATACAGAGGATGATTTGCAGTCACAAGGTGAAGGGTCAGTACCTTTGGCACCAACTCTGTCCGTTCCTCACCCTGATTTTAAAGCCTTAACAAAAAAGGAGAAGAATGATCCAATTTTGCCAGCCTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGATGAACCAAAGAGTAGTGGAAAGGGTCTAGGGTTAAGCTACTCGTCTTCCGGCAGTGAGAATGCTGGTGGTGGTCCTATTAAGGCTGATGAGTTGGATTCTGCTGCTGATACAAGCATTTCAGCACAACCTGATAGTGGAATGGATGAAGAGCAGAGGCAGAAGTGGAGACGCCTGGAGGTTGCTTTAATTGAATATCGTGAGTCTCTAGAGGAGAGAGGAATTAAAAATTTGGAGGAAATTGAGAGAAAAGTTGCAATCCACCGTAAAAGGCTGCAAGCCGATTTTGGGTTATCAGATTCTGGGGAAGATGGTCAAGGAAATAGAAGAACATCTTCAGAGAGGAGGGATAGGCGTGACGATGCACATGATGTCTCAAGGAAGCGGCATCGTAGCTGTAGTCGAAGTCATAGTCCACAACGAAAATCATCAAGTAGAGACAGGGAGAGAGAACATGATGCAGACAGGGACCGAGATAGACACAGAGATAGAGGTCATGATTTTGATAGTGATAGAGGGAGGGACCGGGACCGGGAGAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAGGGATAGAGGCAGAGAAAGAGAAAGAAGGAGACGGGTGAAATAA 2928 0.4443 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTINPNEKLKADSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKESEKKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHVEHSTSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPTGPPVTSVPNQNSELVLTPNVPDIMVIPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLLRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVILFHSICGDAPEIEKNINSEDTVDGSKSNQDSALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVSRLLSLEEAEKQRGYELEDELKYAQNQASSGRHSSSRRETSIEPEPVGFSGWNHYTEDDLQSQGEGSVPLAPTLSVPHPDFKALTKKEKNDPILPASKWAREDDESDDEPKSSGKGLGLSYSSSGSENAGGGPIKADELDSAADTSISAQPDSGMDEEQRQKWRRLEVALIEYRESLEERGIKNLEEIERKVAIHRKRLQADFGLSDSGEDGQGNRRTSSERRDRRDDAHDVSRKRHRSCSRSHSPQRKSSSRDREREHDADRDRDRHRDRGHDFDSDRGRDRDREKSGSRERDDHDRDRGRERERRRRVK 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2746 975 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 864 975 - -
Glsi10g2746 975 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Glsi10g2746 975 MobiDBLite consensus disorder prediction 878 899 - -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 745 776 - -
Glsi10g2746 975 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Glsi10g2746 975 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Glsi10g2746 975 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Glsi10g2746 975 Gene3D - 97 269 IPR012677 -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 11 35 - -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 417 444 - -
Glsi10g2746 975 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Glsi10g2746 975 PANTHER RNA PROCESSING PROTEIN LD23810P 1 910 - -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 411 444 - -
Glsi10g2746 975 CDD RRM_SR140 185 268 IPR035009 -
Glsi10g2746 975 SMART cwf21_2 819 868 IPR013170 -
Glsi10g2746 975 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Glsi10g2746 975 MobiDBLite consensus disorder prediction 719 733 - -
Glsi10g2746 975 Pfam cwf21 domain 820 865 IPR013170 -
Glsi10g2746 975 Coils Coil 448 468 - -
Glsi10g2746 975 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Glsi10g2746 975 SUPERFAMILY ENTH/VHS domain 447 585 IPR008942 -
Glsi10g2746 975 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Glsi10g2746 975 Gene3D - 443 590 IPR008942 -
Glsi10g2746 975 Coils Coil 17 37 - -
Glsi10g2746 975 SMART 558neu5 450 585 IPR006569 -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 911 968 - -
Glsi10g2746 975 SMART rrm1_1 187 263 IPR000504 GO:0003723
Glsi10g2746 975 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Glsi10g2746 975 MobiDBLite consensus disorder prediction 65 80 - -
Glsi10g2746 975 Gene3D - 819 870 - -
Glsi10g2746 975 CDD cwf21_RRC1-like 819 868 IPR047491 -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 1 183 - -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 688 825 - -
Glsi10g2746 975 MobiDBLite consensus disorder prediction 99 169 - -
Glsi10g2746 975 Pfam CID domain 450 578 IPR006569 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2746 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.21e-06 49.3