LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g2740	ATGATGTTATCCCCCACTCTATTAAGCTTTAGCCTTCTTCTTGTCCATAAACACAGAATTCTCACACTCACAAGCAAAACACAATCATCGTCTGATGAATTGTCATTCTTAGCAGCCATGTCTAGCACAGCTGGTCAAATCATCAAGTGCAGAGCCGCGGTGGCATGGGAACCAGACAAGCCTCTGGTGATCGAAGAGGTGGAGGTAGCGCCACCCCAGGCTGGTGAAGTGCGTATGAAGATCCTTTTCACCTCTCTTTGTCGCACTGATATTTACTTCTGGGACACCAAGGGCCAAAAGCCACTGTTTCCTCGCATATTGGGTCATGAAGCTGCAGGGATTGTGGAGAGCGTAGGGGAGGGTGTGACTCATGTCCAACCAGGAGACAAAGCGCTCCCTGTATTCACGGGGGAGTGTGGGGAATGCTCACACTGCAAGTCAGAGGAGAGCAACTTGTGTGAGCTGCTCAGGATCAACACTGATAGGGGTGTCATGCTCAGTGATGGCAAGACCAGATTCTCCAAAAATGGAAAACCCATTTACCATTTCGTGGGAACCTCTACATTCAGTGAATACACTGTTCTCCATGCTGGGTGTGTTACAAAGATCAACCCTGCTGCCCCACTCGACAAAGTTTGTGTTCTCAGCTGCGGACTATGCACTGGTCTTGGTGCTACTGTCAACGTCGCAAAACCAAAGCCTGGTTCTACTGTCGCCGTTTTTGGACTGGGGGCTGTTGGCCTTGCTGCTTGTGAAGGGGCAAGAATTAGTGGTGCATCAAGAATCATTGGGGTTGATTTACTTTCCAGCCGATACGAGCAAGCCAAAAAGTTTGGGGTCACTGAATTTTTGAACCCTAAAGATCATGACAAACCTATACAACAGGTGCTTGCGGAAATGACTAATGGAGGAGTTGATCGTGCTATTGAATGCACTGGAAGCGTCCAAGCCGCCATCCAGGCATTCGAAAGTGTTCATGATGGTTGGGGTGTTGCAGTCCTTGTTGGTGTGCCAAAGATAAATGATGTATTCCAAACTCATCCTCTCAATTTCTTGCAAAAGAGGACCCTTACGGGCGCCTTCTTTGGCAACTACAAGCCCCGGAGCGATCTTCCTACTGTTGTGGAGATGTACATGAACAAGGTGCTGGAAGTGGACAAATTCATCACTCACTCAGTCCCATTCTCAGAGATTAACAAAGCATTTGAATACATGCTGAAAGGAGAAGGCATCAGGTGCGTCATGCGCATGGAAGATTAA	1260	0.481	MMLSPTLLSFSLLLVHKHRILTLTSKTQSSSDELSFLAAMSSTAGQIIKCRAAVAWEPDKPLVIEEVEVAPPQAGEVRMKILFTSLCRTDIYFWDTKGQKPLFPRILGHEAAGIVESVGEGVTHVQPGDKALPVFTGECGECSHCKSEESNLCELLRINTDRGVMLSDGKTRFSKNGKPIYHFVGTSTFSEYTVLHAGCVTKINPAAPLDKVCVLSCGLCTGLGATVNVAKPKPGSTVAVFGLGAVGLAACEGARISGASRIIGVDLLSSRYEQAKKFGVTEFLNPKDHDKPIQQVLAEMTNGGVDRAIECTGSVQAAIQAFESVHDGWGVAVLVGVPKINDVFQTHPLNFLQKRTLTGAFFGNYKPRSDLPTVVEMYMNKVLEVDKFITHSVPFSEINKAFEYMLKGEGIRCVMRMED	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g2740	419	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	108	122	IPR002328	GO:0008270\|GO:0016491
	Glsi10g2740	419	SUPERFAMILY	GroES-like	43	226	IPR011032	-
	Glsi10g2740	419	FunFam	Alcohol dehydrogenase class-P	222	360	-	-
	Glsi10g2740	419	Pfam	Alcohol dehydrogenase GroES-like domain	75	201	IPR013154	-
	Glsi10g2740	419	Gene3D	-	222	360	-	-
	Glsi10g2740	419	FunFam	alcohol dehydrogenase 1-like isoform X1	58	221	-	-
	Glsi10g2740	419	CDD	alcohol_DH_plants	48	416	-	-
	Glsi10g2740	419	PANTHER	ALCOHOL DEHYDROGENASE	45	415	-	-
	Glsi10g2740	419	Pfam	Zinc-binding dehydrogenase	245	376	IPR013149	-
	Glsi10g2740	419	SUPERFAMILY	GroES-like	367	415	IPR011032	-
	Glsi10g2740	419	Gene3D	-	59	409	-	-
	Glsi10g2740	419	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	208	380	IPR036291	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g2740	Glsi-ChrGlsi10	48952708	48960646	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g2740	40	409	Monolignol Biosynthesis Gene Families	AT1G72680	25.333	1.00e-13	70.1