Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2704 ATGGCTTCTTATGAGGCCACAAATATAGTGCTAACCAAAATCAAGAACATGGAACCGGAAAATGCCTCAAAAATTATGGGCTATTTTCTCATTAACCTAGAGGAGAGTGAATTGGTACGATTATCTTGTAGCTCAGACCATGTTCTGCACAAGTTAATCCTCAAGGCAAAGGCTCACTTGAGACTTTCTTCGAACATACCGTTTATCACCTCTGCTCCCTCATCTCCTTCTCCTCTCAACCCTATAGCTAGACCCACTGGTAGCAACCCATTTTCGCAGTTTTCGCCAACAATGGGTGACAATGGTTTTGACTTCGGTGGGAACTCACCTTCACCGTCTTCACATTCTTGGACACGTTCTGGATTCCCAAACAGCCCAAAGTCGAACCCTTTACTTTCTTACCAGAATATCCGTGCTGGGTTCCCAGACAATACCAACACTGATGAACAGCAAATGGATTATTATTTTTCCTTCCTCAACGAGTCGTCCAAAAATGAAGATTTGGTTGATTCACGGCTTGAATTGAGACATGGTATCAACAATTGGCACTCTGATCCTCGTTACCATAAGAGGAGCTACTCAGCTAGCGATGTGTCTTTTGAGTCTGAAGAAGCAAGCTCAGGAATTGGGCATAAACCCTGCCTTTACTTTGCGAGGGGGTTCTGCAAAAACGGCAGCAATTGTAAGTTTGTGCATGGCGGTTTGACTGATTCACTGGATGCTTTCTCTGGTTCCATGATTGGTTCTCCAAATAACATTGACGGGTTCGAACACCGTGAGGACATTATGAGGTTGGAGTCCGCGCAGCAAAGATTAGTGGCTGCATCGCAGCTCATGGCTGGAGCGTCACCATCCTCACACGACAAGTACATAAATTTCTTGATGCAGCAACAAAATGATCCCCAAAGAGCGGCTGCTGCAGCAGCATTAATGATGGGTGAAGAATTTTACACCTTTGGCCGAAACAGGCCGGAAAGGAATGACTTTTTAGCTATGGCATTAAAGTTTGCAGAGCATGATGTCATGTGTGTCCATCGTGAGGAGACTGAATCAATTGTTAACATTTTCAGAAGAGGTATTGTTGATAAGTTGGAGAGAAGGATGGATGGATGCATACATTTAAGATTTGTATATTTGAGTCATAGAGATTCTGGCCTGACAAGCAAATTTGGACCTGTGCAAGATGTGAGGATTCCGTACCAACAAAAGCGAATGTTTGGGTTTGTTACTTTTGTCTATCCAGAGACAGTGAGACTCATCTTATCCAAAGGGAATCCTCATTTTATTTGTGATTCACGTGTGCTTGTCAAGCCCTACAAGGAGAAAGGAAAAGCCCCTGATAAGAGACAACAGCATCAACAGCAGCAGTTGGACAGGGGAGATTTTCCACCATGTTTAAGTCCTTCAGGGTTTGATTCTAAAGAACCTTATGATCTCCATCTTGGACCAAGAATGTTTTATAGTCCACATGAGATCTTGTTGAGAAGAAAATTGGAGGAGCATACTGAGTTGCAGAAAGCCATTGAACTTCAAGATAGAAGGCTGATGAATCTGCAGCTTCCAGACTTCAAGAATAGTCACGTACATCATCACCAACGCAGTCTCTCAGTTGGAGCTCCTTTGCCCTTACAGGAACAACTTCATAGTCATATTAGCAATGCAGTTCTTTCTTCTGATAGCATTAAAGAAGATATTCCAGGCTATAGTGGCAACCTGGCTTCTACTATTTCTTTGCTTAGTGCTACTGCTACTGCTCCTGCTCCTGCTGTGGTTGCTGAACCACAGCAGGAAGTTAATCCAGCTTGCATTCATGATAATGTCAGTGGAAATAAAATGGATAACACGAACACAGAAGTCTTGGATAATAATGTGGAGCAAGTCCTTCCTGATAGCCTATCTGCTTCGCCAACAAAAGCAGCAGGTGTGTCTGATTTATCTGCATTGGCTGAGGTCAACGAAAGTGCTGGGTACTTGACTACCTCATCTACTGATAACTTAGAACCGCTCACTACTTCTAGTGGCATCTCTTCTCATTAA 2037 0.433 MASYEATNIVLTKIKNMEPENASKIMGYFLINLEESELVRLSCSSDHVLHKLILKAKAHLRLSSNIPFITSAPSSPSPLNPIARPTGSNPFSQFSPTMGDNGFDFGGNSPSPSSHSWTRSGFPNSPKSNPLLSYQNIRAGFPDNTNTDEQQMDYYFSFLNESSKNEDLVDSRLELRHGINNWHSDPRYHKRSYSASDVSFESEEASSGIGHKPCLYFARGFCKNGSNCKFVHGGLTDSLDAFSGSMIGSPNNIDGFEHREDIMRLESAQQRLVAASQLMAGASPSSHDKYINFLMQQQNDPQRAAAAAALMMGEEFYTFGRNRPERNDFLAMALKFAEHDVMCVHREETESIVNIFRRGIVDKLERRMDGCIHLRFVYLSHRDSGLTSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKAPDKRQQHQQQQLDRGDFPPCLSPSGFDSKEPYDLHLGPRMFYSPHEILLRRKLEEHTELQKAIELQDRRLMNLQLPDFKNSHVHHHQRSLSVGAPLPLQEQLHSHISNAVLSSDSIKEDIPGYSGNLASTISLLSATATAPAPAVVAEPQQEVNPACIHDNVSGNKMDNTNTEVLDNNVEQVLPDSLSASPTKAAGVSDLSALAEVNESAGYLTTSSTDNLEPLTTSSGISSH 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2704 678 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 639 - -
Glsi10g2704 678 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 378 444 - -
Glsi10g2704 678 Gene3D - 384 461 IPR012677 -
Glsi10g2704 678 Gene3D - 200 270 - -
Glsi10g2704 678 SUPERFAMILY CCCH zinc finger 211 233 IPR036855 GO:0046872
Glsi10g2704 678 ProSiteProfiles Zinc finger C3H1-type profile. 208 235 IPR000571 GO:0046872
Glsi10g2704 678 SMART rrm1_1 371 437 IPR000504 GO:0003723
Glsi10g2704 678 MobiDBLite consensus disorder prediction 659 678 - -
Glsi10g2704 678 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 211 233 IPR000571 GO:0046872
Glsi10g2704 678 MobiDBLite consensus disorder prediction 440 455 - -
Glsi10g2704 678 SMART c3hfinal6 208 234 IPR000571 GO:0046872
Glsi10g2704 678 SUPERFAMILY RNA-binding domain, RBD 387 458 IPR035979 GO:0003676
Glsi10g2704 678 MobiDBLite consensus disorder prediction 440 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2704 Glsi-ChrGlsi10 47096016 47100640 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi10g2704 zf-CCCH 3.1e-05 CL0537