Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2697 ATGGGTCTCTCGAGTCTCCCAGCTCCATCAGAAGGAGTATTTTGTGCGCTTTTGGTAAACACAGCCTTGTCTATATCCCTAGTTAAGGGTATTGTTCGAACAATCCTTCACATTGTTGGTATCAGTCTTTCATCGTCAACCACTCCATCTCCACCAGATATCTCTCAAAACCCACCTGAGTCATTTGAATTGGGGCTTTGCTCCCCTGAAAATTACATTGAAGAGTTTAGAAGCCAGACACCAACAATTCTGTTCAACCATGTGTGTAACTGCAAACAACCTGAACATGACTGCTCTGTATGTCTGACTCAGTTTGAACCAGAATCTGAGATAAACCGCTTATCTTGTGGCCATCTCTTCCATAAAGTATGCTTGGAGAAGTGGTTGGCCTACTGGAACATTACATGCCCACTTTGCAGGACTCCCTTATTGCCCGAAGAAGAGACATCTTGCTTTTGTTTTTCAATCTTTAACCGCTTTGGCTTCTATCATCTTGAAGTTGTGGAGGCTTTTGTTTGTTTTCATGTTTATATTCTTACGACAGTCGAGGAACTCTTTGCCTACAAAATGTATGTCCATCTTGCACTTACCTTTCAGAAGATTAAGTTCTATTTTGGGGGTCTGATCCTGATGGGATCTGGGCTTTTGGTATGGATGCAAAATTTATAG 669 0.4185 MGLSSLPAPSEGVFCALLVNTALSISLVKGIVRTILHIVGISLSSSTTPSPPDISQNPPESFELGLCSPENYIEEFRSQTPTILFNHVCNCKQPEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLAYWNITCPLCRTPLLPEEETSCFCFSIFNRFGFYHLEVVEAFVCFHVYILTTVEELFAYKMYVHLALTFQKIKFYFGGLILMGSGLLVWMQNL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2697 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 156 IPR013083 -
Glsi10g2697 222 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Glsi10g2697 222 Pfam Ring finger domain 97 140 IPR001841 -
Glsi10g2697 222 SUPERFAMILY RING/U-box 93 146 - -
Glsi10g2697 222 PANTHER - 1 150 IPR044249 -
Glsi10g2697 222 SMART ring_2 98 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2697 Glsi-ChrGlsi10 46675819 46676576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2697 1 147 C3H Transcription Factor Family AT2G04240 59.740 2.40e-56 175