Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2694 ATGGGTTATATATGTGATTTTTGTGGAGATCAGAGGTCTATGGTGTATTGCCGTTCTGATGCTGCATGCTTATGTTTGTCATGTGATCGAAATGTTCATTCTGCTAATGCCCTTTCTAGGCGTCATTCGAGAACCCTTTTATGTGAGAGATGCAATTCGCAACCTGCCCTTGTACGGTGTTCTGAAGAGAGGATTACTCTATGTCAGAACTGTGATTGGTTGGGTCATAATACCTCTACATCTTCAACACATAAGAGGCAAACAATCAATTGTTACTCTGGTTGCCCTTCAGCAGAAGAATTTTCTTCAATCTGGTCATTTGTCTTGGATATCCCTTCTATGGGTGAATCTACCTGTGAGCAGGAACTAGGTTTGATGAGCATTAATGAGAACAGCAACAGGAATGTATCTGGTTCAGCTCAAGTAACTGATATACACAGCATGGGTAAGTCTTGGGTTGGGGCCTCTTCAATGCCTGAGTCAAGCTCAGAACCTCGAATTCTGGACCAGTCAACTGGACCTAGCAATGATTGTCTGCCCAAGTTATACTGTCCTAGTACAAGAGGTCCTGGGCCATGTGAAGATGATAAACTGTATGATGATTTCAACATGGATGAAGTGGATCTGAATCTAGAGAACTATGAGGAACTTTTTGGTATGGCTCTCAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGCATTGATAGCTTGTTTGGGACAAAGGACATGTCTGCTGGTGATTCCAATTGTCAGGGTGCTGTTGCCGCTGAGGGTTCATCAGTTGGACTGGTCAATGCAATGCAACCAGCATGCAGCAATGCAGCATCTGCCGATTCCATTTTGAGTACTAAAACTGAACCAGTTCTTTGTTTTACGGGAAGGCAAGCACAATCAAATCTTTCTTTTTCCGGGATCACTGGAGAGAGTAGTGCTGGAGATTATCAAGATTGCGGAGCTTCTTCAATGCTCCTCATGGGAGAGCCTCCTTGGTGTCCTCCTTGCCCTGAGAATACCCTACAATCTGCCAACCGCAATAATGCTGTCATGCGTTACAAGGAAAAGAAGAAGACACGCCAGTTTGAGAAAAAAGTGAGGTATGCCTCTCGCAAGGCAAGGGCTGATGTTCGAAGGCGTGTGAAGGGCCGGTTTGTCAAAGCTGGTGAAGCCTATGATTATGACCCTTTGAGCCAAACCAGAAGCTACTGA 1206 0.4453 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALVRCSEERITLCQNCDWLGHNTSTSSTHKRQTINCYSGCPSAEEFSSIWSFVLDIPSMGESTCEQELGLMSINENSNRNVSGSAQVTDIHSMGKSWVGASSMPESSSEPRILDQSTGPSNDCLPKLYCPSTRGPGPCEDDKLYDDFNMDEVDLNLENYEELFGMALSHSEELFENGGIDSLFGTKDMSAGDSNCQGAVAAEGSSVGLVNAMQPACSNAASADSILSTKTEPVLCFTGRQAQSNLSFSGITGESSAGDYQDCGASSMLLMGEPPWCPPCPENTLQSANRNNAVMRYKEKKKTRQFEKKVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSQTRSY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2694 401 MobiDBLite consensus disorder prediction 151 173 - -
Glsi10g2694 401 CDD Bbox1_BBX-like 47 89 - -
Glsi10g2694 401 MobiDBLite consensus disorder prediction 154 173 - -
Glsi10g2694 401 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
Glsi10g2694 401 SMART bboxneu5 48 89 IPR000315 GO:0008270
Glsi10g2694 401 SMART bboxneu5 4 47 IPR000315 GO:0008270
Glsi10g2694 401 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Glsi10g2694 401 Pfam CCT motif 344 386 IPR010402 GO:0005515
Glsi10g2694 401 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Glsi10g2694 401 CDD Bbox1_BBX-like 4 47 - -
Glsi10g2694 401 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2694 Glsi-ChrGlsi10 46544400 46549077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2694 1 401 C2C2-CO-like Transcription Factor Family AT5G48250 58.881 9.89e-161 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi10g2694 CCT 1.7e-16 CL0281