Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2684 ATGAGACGAACGTCTAAGCTTCACCTCTATATCGCCAGTGGACGGGAAATCGATAAAGACAATGCAGCTATGTCTAAAACATCAATAGAGAGTTATCATGATCTGCGAGATGTTAGAGAGTTGGGCTCAAAAGGCAATATGGATGATGGCATGAATGAGGTCTCTAATAGAGACCCTCATGACAGCTTAGGTCTTGATTACATATGTATAGATTTGCTGGACAGAAAGATTTGCATTAGTTGCAATGAAGGCGGGGAAGTACTAGTTTGTGGTGAAAGAGGTTGCCCTGTTATTCTCCATGCAAAATGTATCTTCCGTGAACCTAAATTTGATGATATGGGAAACTTCTACTGCCCCTATTGTTGGTACAAACGAGCAGTGGCAGAGAAAGATGGGAAAGCTAAGAGGAGAGAGCTCAAAGAGTTGACCCTTGTGGGAAATAGTAGCTGCTTAGATCATGGTAATAGGCAGGGCAGTGACAGTGTCCACAGTCAGCCTTTACAGACAGAGGGAGATCAACAACATGAAATAAAAAGAGTGACAGCTAGTGCTGATCAACATGGGATAGCAGTTGAAAGTGAAGCTCATACAAATGCTTTTGTAGAAACTACAGATGATTCTAGACATTATAGAGAAGAAAAGGCGCCTGTACATATTGATCTGGTACATAAATCTATGAACAAGGAGAAATTTGATGTTCATAACATTTCTGAAACACATGGACCGAGATTTGTTCAGGGGGTTGAACCGGCTGATCCAACATGTAATGATGAAAATGTACATGAAAGGATTGTTGAGGATGGAGAGGAAGCAGAACCTTTCAGTGCTTTCCATTTGGGAAAATACACAGATGGACACTCGCCTGATATTGCATTTGTCAAAGGGGCGCAAGAAAGTGTTACGGTATCTGTAGATAGGAAGGGCACAATGAAAGATAAGGAAAAGTCTCTCCAGAATGAGTTAAAGGTGCCTGCAACGTATAGTTCTGTCAGTGAAACTACTGATTCAGATTCTGAGGCTTTCTCAGTCAAGGAAAGCTGTGTCAAACAAAGGACACGGAAGACAGCATATCCTTGGATAGCTTCTTCTGTTAGAAAAGCATTACCACTGAAGAGTAACTTTGAGGTTGAAAATACTCGTTACAAAAATGAGAAAATTACCACTTCCAAAACTTTAAGACAGCCACAAGGTTATTCTAAGCAGGGCAAAAAGTTGACTTTGTCAACTGGAATGCGTAAGAGATTAAAGTGGACAGCTGAAGAAGAAAATATTCTGAAGGAAGGAGTGTTAAGGTTCTCAATGGAAAACCAGAAGATCCCTTGGAGGAAAATTTTAGATTACGGTTGTCATGTATTTGATAACACTCGTACCCCAGTCGATCTCAAGGATAAATGGAGAAACATTATTGCCAATGAAGGATCGATGTAG 1428 0.4055 MRRTSKLHLYIASGREIDKDNAAMSKTSIESYHDLRDVRELGSKGNMDDGMNEVSNRDPHDSLGLDYICIDLLDRKICISCNEGGEVLVCGERGCPVILHAKCIFREPKFDDMGNFYCPYCWYKRAVAEKDGKAKRRELKELTLVGNSSCLDHGNRQGSDSVHSQPLQTEGDQQHEIKRVTASADQHGIAVESEAHTNAFVETTDDSRHYREEKAPVHIDLVHKSMNKEKFDVHNISETHGPRFVQGVEPADPTCNDENVHERIVEDGEEAEPFSAFHLGKYTDGHSPDIAFVKGAQESVTVSVDRKGTMKDKEKSLQNELKVPATYSSVSETTDSDSEAFSVKESCVKQRTRKTAYPWIASSVRKALPLKSNFEVENTRYKNEKITTSKTLRQPQGYSKQGKKLTLSTGMRKRLKWTAEEENILKEGVLRFSMENQKIPWRKILDYGCHVFDNTRTPVDLKDKWRNIIANEGSM 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2684 475 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 61 470 - -
Glsi10g2684 475 Gene3D - 408 470 - -
Glsi10g2684 475 MobiDBLite consensus disorder prediction 150 171 - -
Glsi10g2684 475 Pfam Myb-like DNA-binding domain 414 468 IPR001005 -
Glsi10g2684 475 SUPERFAMILY FYVE/PHD zinc finger 75 126 IPR011011 -
Glsi10g2684 475 ProSitePatterns Zinc finger PHD-type signature. 78 121 IPR019786 -
Glsi10g2684 475 SUPERFAMILY Homeodomain-like 416 469 IPR009057 -
Glsi10g2684 475 CDD SANT_TRF 416 469 - -
Glsi10g2684 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 167 IPR013083 -
Glsi10g2684 475 ProSiteProfiles Myb-like domain profile. 409 469 IPR001005 -
Glsi10g2684 475 SMART sant 413 471 IPR001005 -
Glsi10g2684 475 MobiDBLite consensus disorder prediction 150 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2684 Glsi-ChrGlsi10 46096023 46104973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2684 414 468 Single Myb Histone (SMH) Gene Family AT3G49850 50.000 5.57e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi10g2684 Myb_DNA-binding 5.7e-07 CL0123