Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2662 ATGGAAGATAAGAATCCACTAATCGTAAAGGTTGCACCAAGTTGGCGGCTCTCAGTTTTGCGTAAATCTCACAAATACCATCTCCTGCCTCTGGTATTTTCTCGGAATTTAATGGGAAATACAGATGCTGAACTTCAAAGTGATAGAGATTCCTTGTCAGATCTTGCTCATCATCATCTACAGACATGTACTAGAGATGAACAAGGTGATAAGACCTCCTTGGTTCATCCATCTAGACGACCAGGGCTCTCTACTTTACAAATACCAGCAAGGTCACTAGAAAGTGGATTATCATCTTTTGCCAAGACAGATGTTCAATTACTGTCAAGTCCAGGTTCTGCTCGAGGAGGACTGCCTCCAAGGCCAAATTCAGCTAGAGTCAAGCCTTCTATCAGAAGTTTACTTCCTCAGAGGAGCTTCAGGGGAAAAAGTTGTTTTCAGGATTGTGAAAGGACTGTTCTCATAGTTCCTGATACTCCCCCATCAGATGGTCCTTTGGATAAGCCTTCAACTTCAAGGTCTCTTTCTCTTAATAAGGTTTTGTTCCCTTCATCAGCAAAAGTAGCAAATTCATTACCAGTTACACCTATTGCATATTCAAGGGCAGAGACTGTTGGTGGAAGACATCTAGGAAGTGACACTGATTTAAGTAAAATAGAGGTCAAGCAATACATGACTCGATCGCTTTCAGTTCCAGTTAATGTCAAAGCCTCTAGTTTAAAGCGTACAGATTCTAGGAGTTTGATCCGTGTAATTTCAGCAAAACCACATCCTGTGGCTGTTGATGGCTGTTCAACTGATAATGCTTCAGTGCCAGAGATTGCCATTGAAGATGCTACTGAGGACATTCCTGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTAGGGGAGGGTGGGGATACTCTTAAGATGGAGTGCAGTTGTAAAGGTGACCTTGCGCTTGCTCACCAAGAGTGTGCTGTAAAGTGGTTCAGTATAAAGGGAAATAAGACTTGTGATGTTTGCAAGCAGGATGTCCAAAACCTCCCAGTGACACTGTTGAAAATCCACAATCCTCAACCTGTTGCTAGACGGCCAACAAATATGCCACGGCAGACAGAAGTTGCTTATCACAGGCAAGTTTAA 1131 0.4288 MEDKNPLIVKVAPSWRLSVLRKSHKYHLLPLVFSRNLMGNTDAELQSDRDSLSDLAHHHLQTCTRDEQGDKTSLVHPSRRPGLSTLQIPARSLESGLSSFAKTDVQLLSSPGSARGGLPPRPNSARVKPSIRSLLPQRSFRGKSCFQDCERTVLIVPDTPPSDGPLDKPSTSRSLSLNKVLFPSSAKVANSLPVTPIAYSRAETVGGRHLGSDTDLSKIEVKQYMTRSLSVPVNVKASSLKRTDSRSLIRVISAKPHPVAVDGCSTDNASVPEIAIEDATEDIPEEEAVCRICLVELGEGGDTLKMECSCKGDLALAHQECAVKWFSIKGNKTCDVCKQDVQNLPVTLLKIHNPQPVARRPTNMPRQTEVAYHRQV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2662 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 345 IPR013083 -
Glsi10g2662 376 ProSiteProfiles Zinc finger RING-CH-type profile. 282 344 IPR011016 GO:0008270
Glsi10g2662 376 MobiDBLite consensus disorder prediction 357 376 - -
Glsi10g2662 376 Pfam RING-variant domain 290 337 IPR011016 GO:0008270
Glsi10g2662 376 PANTHER OS02G0165000 PROTEIN 55 369 - -
Glsi10g2662 376 SMART ringv_2 289 338 IPR011016 GO:0008270
Glsi10g2662 376 CDD RING_CH-C4HC3_MARCH 290 338 - -
Glsi10g2662 376 SUPERFAMILY RING/U-box 286 341 - -
Glsi10g2662 376 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2662 Glsi-ChrGlsi10 45257834 45271180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2662 273 344 C3H Transcription Factor Family AT2G37950 48.000 2.75e-13 66.6