Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2657 ATGGAGTTCGTGGGAAAAACCGTTAAGAAAGAGGTCAAGGGGGTTGGGATTATGTCGGGAACAGTGAAATCTTACGACCCATCATCTGGGTTCGTCGAGATCATCTACGAAGATGGTAATTCTGAGGAGTTGGAATTGTCTGACTTAGCTTCTGTTCTGCAAGGGGAACCGGAGTTCGCAAAGGTAAAGCGCCGGGTAGGAAGGAAACCCAAAAAGCGGCGTCGCGTGGAAAGAAAGCATGAAACCAGAGGAAACTCAGGTAATATTAGTGAGAATTTGGTGATTTCCATGCCCAATAATTCTGAATTTAGGGGGATATTCGATGAAAATGTTTCTGCTAGTGGGAATTTAAAAGTAAACGGTGAGTTAGATAGTGGGTTAGAGAAAAGCCTTGATATGGGAAATGGGACTGGAGGGAATTTTATTTTTAGCACAGAAAATACGGGCAATGTGAATTGGAGTGCCAGCTCTAATGGGAGCGAAGAAAATCAACGGAAGGAAAGTGAGCGTGAAGAGAAATCAAAAGAAAGAATATCTACTAATGGGAATTCCAACTTAACGGATTCTGTAAAAGATGGTTTTGATTTGAATGCTAGGCTTAATCTGAACGAGGATTTGGATATGAATGATGGGTGTAGTTCACTTGTTAATGCTGAGGATGGTTTGAAGAGATGGGATTATATAGATTTAAATTTGGATGTGAATAGTGAAAATGATGTCAACCTTAACATGACTGATTTGGGTTGTTCAGCAGTGGAAACATTGAAGCGGGAATGTAATTTTGATTTGAATGTGGAGGTATGTGATGAAGTTAAGGAAACTGAGGGTGTTGCTGATGGGGATGGACTGTCAGAGGTGGGTGGTATGTTTGGTAAGATGGGGCAAAGTCAAGAAACAAAGACAAATATTAATCAAAATTCTGTAGAAGATGTTAGTGTTAAAAGGAATTTGGATGATAGTACCAATTCTATCAAATTGGTCGAAATTAATGGTTCCCTTAAGCATGTAGGTGAAGATGCTTCTTTAAGTTTGATTGTGGAAGAGGAAGATAAAGTTTACAATGGAGGTATTGCGGCCATTGACTCTATTGGGGTTTCAAATGCTATTTCTGTGAAGGATTGTAATTCTGTGGAGGTTTGGCAAGAGCATAGTCCTTCTAAACCTGGTATTGCTACAATTCATGAATACCAAGATGATCCAGAAAGTCAAGGTAAACAAGGAAGTAGCCGAAGGAAGAGAAGAAAACTGTCAGATAATCTGCAAACAATGACAGAGACAGTTTTAAGGAGGAGTTCTCGCCGGGCGTCAGCTAAAAAACATGATTCAAGCACTATAGCATTGCATTTGATGGATGAACCACAGATGTCACCGGGGCCCAGTGCATTAACAGATGAAAAAACTATAATATCTGTCTTTGAGCAATATGAACATTGCAACATTCTTCCACCAAAGCTGCAATTACCCCCTTCGTCTCAAAATCTGAACTTGGATGACATTCCTGTTCTTGAACTTTTTTCCATTTACACCTGTTTGAGGTCGTTCAGTACTATATTATTTTTGAGTCCATTTGAGTTGGAGGACTTTGTGGCTGCACTGAAGAGTGGAAATCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTTAGAAAACACTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCCAATTGCCTGAGGAATTTGAACTGGGATTTGTTGGACCTGGTCACATGGCCTATTTTCATGGCTGAATACCTTCTGCTTCATGGTTCAAGATTTAAAACTGGTTTTGTTCCTGGCCACTTGATGTTCAGAAGTGACTACCACAAACAACCAGTAACTATGAAGGTTGAAATTCTTCAATGCCTTTGCGATGATATGATCGAAGCGGAGGCCATAAGATTGGAGCTTAACAGAAGATCTTTGGTAACTGATCAGACTGATATGAGTTTTGATCAGAATATGTATTTTGACATTTGCAAGAAAAGGAGAGCTCTAATGGATGTGTCTAGTGGCTCTTGTCTGACTGAGGAGATAGTTGATGACTTAACTGACTGGAACAGTGATGAATGCTGCCTTTGCAAGATGGATGGAAGTTTAATATGCTGTGATGGTTGCCCTGCTGCCTTCCACTCGAGGTGTGTGGGAATTGCAAATGACCATTTACCTGAAGGTGATTGGTATTGCCCTGAGTGTGCAATTGGTAGACATAAGCCCTGGATGAAACCCAAAAAATCACTTAGAGGAGCAGAGCTGTTAGGAATTGATCCTCATGGCCGTCTTTATTTTAACAGCTGTGGTTACCTGTTAGTGTCAGATTCATCTGACATGGGATCCTTGTTCAGTTACTACCACAGAAATGATTTACATGCTGTAATAGAAGTGCTAAAATTGGCAGATGCTTTCTATGGTGGTATATTAATGGCTGTCTACAAGCACTGGGATATTCCTGTTAACTCAAACGGAGGAGCTTGTAAGTTAGAAGTCTTAAATCAAAGAGCCTGCAATAACATTCATACGAATGTTGAATACTCTGCAATGTATACATCCTTAGCTCCTTTTACATCTTCAGAAACACTTTTGGACAAGAATCAGGCTAATGATCAAAGAAAGATTGAAGAATATTCAAGTGCTGGATGTTTTAATAATCTTGGCCAAGAGTTCCTAAAAGATGAGAATCAGTTAGATTCAGTGACAAAAATAGAAAGCCCTTGTGTTGCTTCAGAAGGATCAGCTGATACTACATTAATGAGATCATCCATTGACAACCTTCAACCAGTTGGGCCTCATGATTCCAATAGACCTGATGGGTCCTTGAATCAGTCAGTAATACCAGAAAAATGCCATCCAATTGGTCACTCTTCTTTGACATCTTCCAGCTTACATGCAAGACATAAAATAAGCTTGACCTCTGCAGGGACTGGCTATACCGCATCTATTGTGTCCAATGGGAATAGGGATACAGCCGAATTGCCTTTTGGAATTGACTACATAAACTGTTACAGCTTTGCACGAACTGCCTCATCAGTGGCAGAGGAGTTAATGTGTAAATCACCTGAAAAAATCAATAAGAACTTTGTAATGTCTGAAGAGGACTTAATCTCAGAACAAGCAAAGGCCATTATTAAGAAGTCTTTAAACTTTTACTGGCCTAGTACTCTAAATTTAAATGCATCTGTCCGAAAGGAAAAATGTGGGTGGTGCTTTTCTTGCAAAGTTCCAAATGATGACAGAGATTGCTTGTTTAATGCTGTGGTGATTCCGGTTCGGGAAGTGTCTAAAAGTTATCTAGTTGGGCTTCAACCCAAGAAGAATCAGAATGTCTATCTTAGAGATGTTATATGTCATATTCTCAGCCTTGAGGATCGATTACGTGGGCTTCTGTCAGGGCCATGGTTGAATCCCCATCATTCTTGGAATTGGCGTAGAGATCTTCTGAAGGCATTTGATGTTGCATCCATTAAACGCTTATTGCTCACTTTAGAATCCAATTTGCGGCTTCTTGCACTTTCAGCTGATTGGTCAAAACATGTGGATTCTGTTGTTACCATGGGTTCTGCTTGTCATATTGTGGCCAGTTCATTACGCACATCTTCAAGGCATAGTATTGGAAGGAAAAGGACTAGGTGTTCTGATATTGAGTCCAACTCATCTTCTAACACTACCAGTGGTTTGGGGATATATTGGTGGAGAGGTGGCAGGCTTTCACGCCATTTGTTTAATTGGAAGGCTTTGCCTTGCTCCTTGCTTACCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCGGGCATACTGTATCCTGAAAATTCAGATTTTGCAAGGAGAAGCAAATATATTGCTTGGCGAGCTGATGTTGAGGCATCAATTAGTGTTGAGCAGCTTGCTATTCAGGTTAGAGATCTTGATTCCAACATTAGGTGGCATGACATTGAGAATACTCATCCTCTATATGTGTTAGACAAGGAATCTAAAAAATCAATCAAGCTGTTCAAAAAAGTAATTGTACGCAGGAAGTGCACCAAAGGGGAATCTGTGAAGTATCTCCTTGATTTTGGGAAGAGAAGGGCCATTCCAGATATTGTTACCAAACATGGTTCATTGTTGGAACAATCTTCAAGTGACAGGAAGAAATATTGGCTAGATGAATCTTATGTTCCTTTGTATCTCTTAAAGAATTTTGAGGACAAAAAAATTGCTCGCAAGTCCAACGAAATAAAACCAGGAAAAGTTCTTGAGAGTGGTGTATTAAATAAGAAAGTTCCTAAAAAAAGGGGGTTTTCATATTTGTTTTCTAGGATGGAAAGATCTGATTATCATCAGTGTGGCCACTGCAACAAAGATGTTCCAATCAGGGAAGCTGTAAGTTGCCTGTACTGTAAAGGATTCTTCCATAAGAGGCATATCAGGAGATCTGGTGGCACAACTGAATGCACATATTTGTGTCGCAGATGCCAGGATGGGATGCATATGAAGCCTAATTCTAAAAGGAGAGTTGACCCAAAACTAGGGAGGATTCAATCACAAAAATGTAGAAAGGTCCCCTCAATAGGTAGATCAGCTAACCTTAGAGGCAGTAAAAAGTCAGTGAGTAAGGGACGGCAAGTAAAATCTCGGACCAATAAAAAGTTCCCATCAAGTATACCCCTGCGCCGTTCAGCTAGGAAGGCCAAATGCTTGTCCGTGCAAAGTAAAAGGAATGGAGGACGTAAAAAAGGAAAGCAAAGTAAATCCAAGAAGTTGATATCTAGGAAGCCTAAGGAAACTACTCAATGTAAGAAGCTGGCAGTAACTTCTGAGCGTAAGAAAAGAACTCATGTCTGTAAGAGTTACTGGCTTAATGGTCTTTGGTTGTCTAGAAAGCCAAATGATGAACGAGTAATGCTGTTTAGGGAGAAAAAGCATCTTGCCCCCTCAGAAGGTTTTTCTGGCACCTTTGATCAACCTAAATGCTGCCTTTGTTGTGGGGATGGATGCACTTTAAGTTATATTGCTTGTGAAATCTGTGGAGAGTGGTTTCATGGAGATGCTTTTGGACTCACTTTAGAGAAAGTTAGACAACTTATTGGATTCAGGTGCCATGTTTGTCGTAATAAGGCTGCTCCGATCTGCCCCCATATGGATAGTAATGCCTTACCTCATGGTGAATTTGATGCTGCAACTGAGTGCGTAGAGGAATTATCTAATTCTGTTTCACTTCAACCTTTTAGTGAGGTTCGATGA 5241 0.4026 MEFVGKTVKKEVKGVGIMSGTVKSYDPSSGFVEIIYEDGNSEELELSDLASVLQGEPEFAKVKRRVGRKPKKRRRVERKHETRGNSGNISENLVISMPNNSEFRGIFDENVSASGNLKVNGELDSGLEKSLDMGNGTGGNFIFSTENTGNVNWSASSNGSEENQRKESEREEKSKERISTNGNSNLTDSVKDGFDLNARLNLNEDLDMNDGCSSLVNAEDGLKRWDYIDLNLDVNSENDVNLNMTDLGCSAVETLKRECNFDLNVEVCDEVKETEGVADGDGLSEVGGMFGKMGQSQETKTNINQNSVEDVSVKRNLDDSTNSIKLVEINGSLKHVGEDASLSLIVEEEDKVYNGGIAAIDSIGVSNAISVKDCNSVEVWQEHSPSKPGIATIHEYQDDPESQGKQGSSRRKRRKLSDNLQTMTETVLRRSSRRASAKKHDSSTIALHLMDEPQMSPGPSALTDEKTIISVFEQYEHCNILPPKLQLPPSSQNLNLDDIPVLELFSIYTCLRSFSTILFLSPFELEDFVAALKSGNPSILFDSIHVSILQTLRKHLEYLSNEGCQSASNCLRNLNWDLLDLVTWPIFMAEYLLLHGSRFKTGFVPGHLMFRSDYHKQPVTMKVEILQCLCDDMIEAEAIRLELNRRSLVTDQTDMSFDQNMYFDICKKRRALMDVSSGSCLTEEIVDDLTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIANDHLPEGDWYCPECAIGRHKPWMKPKKSLRGAELLGIDPHGRLYFNSCGYLLVSDSSDMGSLFSYYHRNDLHAVIEVLKLADAFYGGILMAVYKHWDIPVNSNGGACKLEVLNQRACNNIHTNVEYSAMYTSLAPFTSSETLLDKNQANDQRKIEEYSSAGCFNNLGQEFLKDENQLDSVTKIESPCVASEGSADTTLMRSSIDNLQPVGPHDSNRPDGSLNQSVIPEKCHPIGHSSLTSSSLHARHKISLTSAGTGYTASIVSNGNRDTAELPFGIDYINCYSFARTASSVAEELMCKSPEKINKNFVMSEEDLISEQAKAIIKKSLNFYWPSTLNLNASVRKEKCGWCFSCKVPNDDRDCLFNAVVIPVREVSKSYLVGLQPKKNQNVYLRDVICHILSLEDRLRGLLSGPWLNPHHSWNWRRDLLKAFDVASIKRLLLTLESNLRLLALSADWSKHVDSVVTMGSACHIVASSLRTSSRHSIGRKRTRCSDIESNSSSNTTSGLGIYWWRGGRLSRHLFNWKALPCSLLTKAARQAGCTKIPGILYPENSDFARRSKYIAWRADVEASISVEQLAIQVRDLDSNIRWHDIENTHPLYVLDKESKKSIKLFKKVIVRRKCTKGESVKYLLDFGKRRAIPDIVTKHGSLLEQSSSDRKKYWLDESYVPLYLLKNFEDKKIARKSNEIKPGKVLESGVLNKKVPKKRGFSYLFSRMERSDYHQCGHCNKDVPIREAVSCLYCKGFFHKRHIRRSGGTTECTYLCRRCQDGMHMKPNSKRRVDPKLGRIQSQKCRKVPSIGRSANLRGSKKSVSKGRQVKSRTNKKFPSSIPLRRSARKAKCLSVQSKRNGGRKKGKQSKSKKLISRKPKETTQCKKLAVTSERKKRTHVCKSYWLNGLWLSRKPNDERVMLFREKKHLAPSEGFSGTFDQPKCCLCCGDGCTLSYIACEICGEWFHGDAFGLTLEKVRQLIGFRCHVCRNKAAPICPHMDSNALPHGEFDAATECVEELSNSVSLQPFSEVR 1746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2657 1746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1650 1709 IPR013083 -
Glsi10g2657 1746 SUPERFAMILY FYVE/PHD zinc finger 686 751 IPR011011 -
Glsi10g2657 1746 Pfam PHD-finger 697 739 IPR019787 -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 162 178 - -
Glsi10g2657 1746 SUPERFAMILY FYVE/PHD zinc finger 1650 1705 IPR011011 -
Glsi10g2657 1746 SMART PHD_3 1657 1703 IPR001965 -
Glsi10g2657 1746 SMART PHD_3 696 739 IPR001965 -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 64 79 - -
Glsi10g2657 1746 PANTHER PHD FINGER FAMILY PROTEIN 2 1708 - -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 63 92 - -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 381 442 - -
Glsi10g2657 1746 Pfam DDT domain 502 554 IPR018501 -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 1571 1587 - -
Glsi10g2657 1746 ProSiteProfiles DDT domain profile. 498 558 IPR018501 -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 147 190 - -
Glsi10g2657 1746 CDD PHD1_AIRE 696 738 - -
Glsi10g2657 1746 ProSitePatterns Zinc finger PHD-type signature. 697 738 IPR019786 -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 1498 1595 - -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 147 161 - -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 1498 1513 - -
Glsi10g2657 1746 ProSiteProfiles Zinc finger PHD-type profile. 694 741 IPR019787 -
Glsi10g2657 1746 MobiDBLite consensus disorder prediction 398 419 - -
Glsi10g2657 1746 SMART testlast3 498 558 IPR018501 -
Glsi10g2657 1746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 756 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2657 Glsi-ChrGlsi10 45025173 45069548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2657 1 1719 PHD Transcription Factor Family AT5G12400 41.183 0.0 1162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Glsi10g2657 DDT 1.3e-11 No_clan