Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2628 ATGTCTTCGAAGCGCTGGACCATCGACCCTGACTTCGACGGCATCGACCTCGACCCTTCCGATTTCGGCTCCTCCATCCCCCTCAAGAAGGTCCCAAACGGCGACGTTTTTGCAGCCTCTCGAGCCGGCGACGTTGACCGCCTCCGCTACCTCCTTGAGTCTGGAGTGAACGTCAATGCAAGGGACCAGTGGGATTCAGTGGCTTTGTACTATGCTTGCCTTGCCGGTCACCTCGATGCTGCGCGGATGTTGCTAGAGAGTGGTGCTATCTGCTCCGAGCACACCTTTGACGGTGACCGCTGCCATTACGCCGCCCTCAATTTGAAGGTCAGGAAGTTGTTGAAGGCGTTCGAGGCGAGACCGCCGCCGTTGGGTCCCTTGCAGGCGGCATTGAGGGACACTTTCTTGGGATGTGCAGCTAATAGGGCCTACTTGGAGTTGGCTGACCCGCAGTTTCAAATTCCTGGTATCTCATCAACTCAGGGATCTAATTGCAACCAGTTTCCTCCGGATGTGGTTTTTTTTGTACAAGGAAGACCTATTTCAGCTCATAGAGTCATATTAAGTGCAAGGTCACCATTTTTGAAGAAAAAGTTTGAGAGTGATTGGAAAGAGCGCAGGGAAGTAAGACTCTCCAGGGAGAAGTTGTCATATCCTGCTCTCTATAGCCTTTTACACTTCTTTTATTCTGACAGATTAGAGATTGCAGTAGATGACATGGAAGATCTTTTGAGAATATGTAAAGTATGCAAATGTGAATCACTACAGAGAATTCTTGAGAAAGAACTAATTCATCAAAAATATGCAGAGTATAAAGCACTGAGAGATTTGGACAATTCTCAGAAACGGTTTATTTTACAGGGTTTATCCCTTTCTGAAGAAGACAGGCTTCCGGCGGCCTTGCATCAAATCCTTCTGATTACCCTTTCAAATTCCACCCGAGAAAATGATCAAGATGATGAAATTGAAAATTTGATATTTGGGGTGGGTGCAATGCAAATTCGTAATTTTACGGATGATCTTGCGGATGTTTATGTAAGAGTTGATAGAAAAATTTTCCGCTGCCATCAAGTTATTTTAGCATCAAGGTCAGAATATTTCAAAGCAAGATTGTCGCATATAAAGGAGTTCCATGAAGGAAAAGATGAGTTATCTGTTAGTTCCCATCCTTGTCTTGAAGAACATGATTTGAGCAAGAAAGCATTTGAGAAAATGATTGAGTATATGTACACTGATGGTTTGAAGGATATAGATCCAGATCAGGCCGAGGAAATGTTTGATGCTGCTTCTAGATACTTATTGTTTCCTCTTAAGCGTGTGGTGGCTGATGCACTACTGCCACACCTGGAAATGGTTTCACCTGCAGAACTTTGCCATTGGTTGATACTGGCAGACATGTATGGTGTTTTGAAGATACGGGAATATTGTCTAGATACCATAGCTTGTAATTTTGAAACATTTGCTGACACTAAAGAATTCCGAGCAATACTATTGACGCTGCCACCGCCATCTGGAGACTTCTCACTTCGTACCACTGTTCCAAGTGTCCCTGGAGCTGTACTAAATACTGATCATGGCAATCTTCTTGATGATTTACGAGAGAAATGGCTTGAAGTTGAAGCTGCTGAGCTTGATGAAAGAGATGACAGTGCATTACAGTTTGACAAGCGCCTAGAGATGCTTATGATCGTTGCGGAGCAAGAAAAATTGGAGAATGCTGTTTCAGATGATATCACCACATACTCTGGAGCCTCTACTTTGATTTCAGCAGAACGAGAGGAGCCCTAG 1788 0.4435 MSSKRWTIDPDFDGIDLDPSDFGSSIPLKKVPNGDVFAASRAGDVDRLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQAALRDTFLGCAANRAYLELADPQFQIPGISSTQGSNCNQFPPDVVFFVQGRPISAHRVILSARSPFLKKKFESDWKERREVRLSREKLSYPALYSLLHFFYSDRLEIAVDDMEDLLRICKVCKCESLQRILEKELIHQKYAEYKALRDLDNSQKRFILQGLSLSEEDRLPAALHQILLITLSNSTRENDQDDEIENLIFGVGAMQIRNFTDDLADVYVRVDRKIFRCHQVILASRSEYFKARLSHIKEFHEGKDELSVSSHPCLEEHDLSKKAFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRVVADALLPHLEMVSPAELCHWLILADMYGVLKIREYCLDTIACNFETFADTKEFRAILLTLPPPSGDFSLRTTVPSVPGAVLNTDHGNLLDDLREKWLEVEAAELDERDDSALQFDKRLEMLMIVAEQEKLENAVSDDITTYSGASTLISAEREEP 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2628 595 FunFam BTB/POZ domain-containing protein 30 153 - -
Glsi10g2628 595 SUPERFAMILY POZ domain 338 448 IPR011333 -
Glsi10g2628 595 Pfam BTB/POZ domain 340 445 IPR000210 GO:0005515
Glsi10g2628 595 Pfam BTB/POZ domain 166 266 IPR000210 GO:0005515
Glsi10g2628 595 SMART BTB_4 342 449 IPR000210 GO:0005515
Glsi10g2628 595 SMART BTB_4 170 267 IPR000210 GO:0005515
Glsi10g2628 595 Pfam Ankyrin repeats (many copies) 37 85 IPR002110 GO:0005515
Glsi10g2628 595 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 13 565 IPR044515 -
Glsi10g2628 595 Gene3D Potassium Channel Kv1.1; Chain A 336 491 IPR011333 -
Glsi10g2628 595 Gene3D Potassium Channel Kv1.1; Chain A 161 285 IPR011333 -
Glsi10g2628 595 CDD BTB_POZ_ZBTB_KLHL-like 341 432 - -
Glsi10g2628 595 CDD BACK 458 493 - -
Glsi10g2628 595 SUPERFAMILY Ankyrin repeat 38 115 IPR036770 -
Glsi10g2628 595 FunFam BTB/POZ domain-containing protein 164 286 - -
Glsi10g2628 595 Gene3D - 22 154 IPR036770 -
Glsi10g2628 595 ProSiteProfiles BTB domain profile. 342 418 IPR000210 GO:0005515
Glsi10g2628 595 ProSiteProfiles BTB domain profile. 170 237 IPR000210 GO:0005515
Glsi10g2628 595 ProSiteProfiles Ankyrin repeat profile. 39 63 IPR002110 GO:0005515
Glsi10g2628 595 SUPERFAMILY POZ domain 164 265 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi10g2628 BTB 3.3e-14 CL0033