Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2603 ATGAATACATTTTCACATGTTCCTCCAGGCTTTCGGTTCCATCCCACTGATGAGGAACTTGTTGATTACTACCTTAGAAAGAAGGTAGCTTCAAAAAGGATTGATCTAGATGTCATCAAAGATGTCGATCTCTACAGAATTGAGCCATGGGATCTTCAAGATAAGAAGTATCTGATTGGAACTCGGACGAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGATAAGGCAATCTATTCAAGGCATTGCCTAATTGGGATGAGGAAGACTCTAGTGTTCTACAAAGGACGAGCCCTAAATGGACAGAAGTCAAATTGGATCATGCATGAGTACCGCCTAGAAACCAATGAAAGTGGAACTCCTCATTAG 378 0.4153 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYRIEPWDLQDKKYLIGTRTNRATKAGFWKATGRDKAIYSRHCLIGMRKTLVFYKGRALNGQKSNWIMHEYRLETNESGTPH 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2603 125 SUPERFAMILY NAC domain 5 121 IPR036093 GO:0003677|GO:0006355
Glsi10g2603 125 Gene3D NAC domain 16 125 IPR036093 GO:0003677|GO:0006355
Glsi10g2603 125 ProSiteProfiles NAC domain profile. 7 125 IPR003441 GO:0003677|GO:0006355
Glsi10g2603 125 Pfam No apical meristem (NAM) protein 8 116 IPR003441 GO:0003677|GO:0006355
Glsi10g2603 125 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2603 Glsi-ChrGlsi10 39709884 39710407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2603 1 125 NAC Transcription Factor Family AT1G12260 76.389 1.93e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi10g2603 NAM 2.9e-31 No_clan