Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2596 ATGGGTTTTTCCGAAGTGCTTAATTCTGAGTTTGATTTACCGGTAGATGAAGGATCCGAGTGGAAAGTATATAAAATGCAATCGGATAACGGTAAGTTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGCGGCTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTTATTATGAAGGATCGGACGACAGGTAGAGCCCGCGGATTTGGGTTTGTTGTTTTTACCGACCCAGCTGTTGCAGAGAGAGTCATAAAAGAGAAGCACAATATTGATGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCTAGAGATGACCAGAACATACTGAGTAGAAGCAGTGGTAGCATCCATGGTTCCCCTGGTCCAGGCCGCACAAGGAAGATATTTGTTGGAGGTTTAGCATCAACAGTTACAGAGAATGATTTCAAGAAGTACTTTGATCAATTTGGGACAATAACAGATGTTGTAGTGATGTATGATCACAACACTCAGAGACCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCAAAAGAATTATCACCAGGACCGAACCGCAGCCCACTCAGTGGATATAACTATGGACTTAGTAGGGTCAATAGTTTGTTAAATGGCTTCACCCAGGGATATACTCCTAGTGCTGTTGGAGGCTTTGGACTTAGGGTCGATGGAAGATTCAGTCCTGTTGCAAGTGGTCGAAGTGGATTTGCTCCATTTGGATCTGGTTATGGAATGAGTATGAATTTTGAGCCTGGTTTGAACCCTGGATTTGGGGGTAATGCTAATTTCAATAGCAATCTTAGCTATGGTCGGGGAATTAATCCTTATTATATTGGCAGCTCAAATAGGTTCGTGAGTCCTATTGGGTATGATGGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGGAATTTGTGGGGGAATGGCAGTCTTAATTATGGAACAAGCTCTGCAAATTCCAGTGCATTCATGGGATCAGGAAGTGGGAATGTTGGAGGAAACGCATATGGCAATACCGGAGTCAACTGGAATTCCTCAGAAATTTCTGGTCAAGTTGGAATGAACAATACGTCACAGAGTAGCAGCAATCTTGGCTATGGAGGTGGAGACAACAGTTATGGTTTGGGAACTGGTGGGTATGGAAGAAGCAGTGGTACCAGTATTGCCCCAACATCATCATACTCTTCATCAAATGGTGGTTTTGATGGGGCTTTTACTGATTTCTACAATTGTAGTTCAGTTTATGGTGATCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGGTCTGGTCCCTTTGGTTATGGGCTAGGTAGTGCAGCTTCTGATGTATCTGCCAAAAGTTCTCCTGGTTATGTCGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1512 0.4306 MGFSEVLNSEFDLPVDEGSEWKVYKMQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFTDPAVAERVIKEKHNIDGRMVEAKKAVPRDDQNILSRSSGSIHGSPGPGRTRKIFVGGLASTVTENDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPNRSPLSGYNYGLSRVNSLLNGFTQGYTPSAVGGFGLRVDGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNPGFGGNANFNSNLSYGRGINPYYIGSSNRFVSPIGYDGGNGGNNSFFSSVTRNLWGNGSLNYGTSSANSSAFMGSGSGNVGGNAYGNTGVNWNSSEISGQVGMNNTSQSSSNLGYGGGDNSYGLGTGGYGRSSGTSIAPTSSYSSSNGGFDGAFTDFYNCSSVYGDPTWRSSNSERDGSGPFGYGLGSAASDVSAKSSPGYVGGYTVNKRQPNRGIAT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2596 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 107 IPR000504 GO:0003723
Glsi10g2596 503 Gene3D - 29 113 IPR012677 -
Glsi10g2596 503 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 26 499 - -
Glsi10g2596 503 SUPERFAMILY RNA-binding domain, RBD 27 129 IPR035979 GO:0003676
Glsi10g2596 503 Gene3D - 128 214 IPR012677 -
Glsi10g2596 503 MobiDBLite consensus disorder prediction 476 503 - -
Glsi10g2596 503 CDD RRM1_hnRNPA_hnRNPD_like 33 103 - -
Glsi10g2596 503 FunFam Heterogeneous nuclear ribonucleoprotein 1 30 112 - -
Glsi10g2596 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 208 IPR000504 GO:0003723
Glsi10g2596 503 CDD RRM2_Hrp1p 132 209 - -
Glsi10g2596 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 190 IPR000504 GO:0003723
Glsi10g2596 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 94 IPR000504 GO:0003723
Glsi10g2596 503 FunFam Heterogeneous nuclear ribonucleoprotein 1 128 215 - -
Glsi10g2596 503 SUPERFAMILY RNA-binding domain, RBD 130 334 IPR035979 GO:0003676
Glsi10g2596 503 SMART rrm1_1 132 204 IPR000504 GO:0003723
Glsi10g2596 503 SMART rrm1_1 32 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2596 Glsi-ChrGlsi10 39195842 39202984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2596 33 306 Eukaryotic Initiation Factors Gene Family AT1G71770 27.869 6.39e-15 75.5