Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2564 ATGGCTGAAGCTTCAAGAATCCTATACACCGCCACGCTTATTCCTAGTTTCAGTTCAACCCAGAAATCCCATGTGGGTCAGCGTCATCTAACTATTTCACGCAAACACCAGATTGATTGTTCGGTTTCTGCGAGTGATGCCACCAAAATGGCTGTGTCGGAAACTATATTATGGGGCTGTGAGATTGATTCTTTAGAAAATGCATCAGCTTTGCAAAGATGGTTGTCTGACTCAGGGCTTCCACCCCAGAAAATGGCCATAGAAAGAGTGGAAGTAGGGGAGAGAGGACTTGTTGCCTTGAAAAATATAAGGAAGGGTGAGAAGTTGCTCTTTGTGCCTCCTTCACTAGTCATCACTGCAGATTCTGAGTGGAGCTGCCCAGAAGCTGGTGAAATATTGAAAAAGAATTCAATGCCAGATTGGCCATTGCTTGCAACTTACCTCATTAGTGAAGCAAACCTCATGAAATCTTCAAGATGGAGCAGTTATGTGTCAGCCTTACCTCGGCAACCCTATTCACTTCTCTACTGGTCACAAGCCGAACTAGATCGCTATTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAGTATCCTAATTTATTCCCTGAAGAGGTGTTCAACATGGAGACCTTCAAATGGTCATTTGGTATTCTTTTCTCTCGCTTGGTTCGGTTACCCTCAATGGATGAAAAGTTTGCTTTGGTTCCCTGGGCAGATATGCTGAACCATAGTTGTGATGTGGAAACATTTTTGGATTATGATAAGTCATCAAAGGCAATTGTCTTTACTACAGATCGTCCCTACCAGCCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAGTCTAATGGAGAGCTTCTGCTTTCTTATGGATTTGTTCCAAAAGAAGGAACTAATCCTAGTGATTCAGTTGAGTTGTCACTGTCACTCAAGAAATCTGATAGATGCTATGAGGAGAAGTTACAACTCTTAAAGAAGAACGGACTGTCAGCATCTCAGTGTTTCCCTGTAAAAATTACTGGTTGGCCATTGGAGTTAATGGCATATGCTTATTTAGCTGTGAGCCCTTCAAGCATGAGAGGGAAATTTGAAGAGATGGCTGCTGCAGCATCAAATAAAACAACTACCAAGAAGGATCTGAGTTATCCTGAAATAGAAGAGCAAGCATTACAATTTATACTAGACAACTGTGAATCCAGCATATCAAAGTACAAGAAGTTTTTACAGGAAAGTGGATCACTGGATTTGGACGTGACTTCTCCAAAACAACTCAACCGAAGGCTGTTTCTAAAACAGCTTGCTGTGGACTTGTGTACTAGCGAGCAAAGAATACTATTCCGCACTCAATACATACTGCGGAGAAGACTGAGGGATATGAGGACTGGTGAATTACGAGCTCTAAGAATCTTCGATGGGTTCAGGAATCTTTTCAATTGA 1497 0.4142 MAEASRILYTATLIPSFSSTQKSHVGQRHLTISRKHQIDCSVSASDATKMAVSETILWGCEIDSLENASALQRWLSDSGLPPQKMAIERVEVGERGLVALKNIRKGEKLLFVPPSLVITADSEWSCPEAGEILKKNSMPDWPLLATYLISEANLMKSSRWSSYVSALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPNLFPEEVFNMETFKWSFGILFSRLVRLPSMDEKFALVPWADMLNHSCDVETFLDYDKSSKAIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLKKSDRCYEEKLQLLKKNGLSASQCFPVKITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTTKKDLSYPEIEEQALQFILDNCESSISKYKKFLQESGSLDLDVTSPKQLNRRLFLKQLAVDLCTSEQRILFRTQYILRRRLRDMRTGELRALRIFDGFRNLFN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2564 498 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 51 312 - -
Glsi10g2564 498 Gene3D set domain protein methyltransferase, domain 1 19 312 - -
Glsi10g2564 498 CDD SET_RBCMT 82 313 IPR044431 GO:0016279|GO:0018022
Glsi10g2564 498 SMART set_7 83 305 IPR001214 GO:0005515
Glsi10g2564 498 Pfam Rubisco LSMT substrate-binding 332 465 IPR015353 -
Glsi10g2564 498 Pfam SET domain 95 299 IPR001214 GO:0005515
Glsi10g2564 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 329 495 IPR036464 -
Glsi10g2564 498 ProSiteProfiles SET domain profile. 83 299 IPR001214 GO:0005515
Glsi10g2564 498 PIRSF RMT_SET 1 495 IPR011192 GO:0009507|GO:0030785
Glsi10g2564 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 66 434 - -
Glsi10g2564 498 FunFam Rubisco methyltransferase family protein 318 481 - -
Glsi10g2564 498 SUPERFAMILY SET domain 67 316 IPR046341 -
Glsi10g2564 498 Gene3D - 318 488 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2564 Glsi-ChrGlsi10 29189227 29201617 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi10g2564 SET 1.3e-16 No_clan