Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2479 ATGTCGGATGACATGCTTGTACATTTCTCATCCAACTCCTCCAACCAATCGGACCAGTCTTTGCCTACTAAGATTGCAAAGCTTGAAGCTCGCATGGTGGGCAAGGCTTCGTCCACAGCTGCCACTCTTCCGTCCGCTCAGCAGTCAACTTGGGCCCTTGTTCCTTCAGCTGGGAAATTCGGGGGAGCGGCCGAAGACTTGGTTGGACCGTCCACTTCTAGTGATTCCGATGACGACAATGGTGGGGAATTCCTAATACAAGCCAACACCACACAGAAGCGCCAAAAACTTCAAGAAGATGATAACTCAAATAATTTTAAACATGTTGAGGTTGTTACTGATGGAAGGCAAACTAGTTTGGAGGCTGTGGAAACCAAAATGACTGCTGATGTAAATAGGAAAAAACATGGTCGTGGGAGAGGGAATTCTGGTTCAGGTAGGGGACGTAGTCCCAGAGTTAATGATCAGACCAGAGCACAAATTTCTCCTCCAACAGTTTTGGCTTCCAATGGTCAGCTTGAGAATGCAAACCATAAAGAGGGAAGATTCAAAGATCAGTCTCGCAATGACAGCTGTGCTTCATTAGAGGAGGAGAATGCATCTTTACGTGCAAAAGTTGTTGCATTGGAGGAGGACTTGCGTAAATCAAAACAAGATACCTCTGAATATCAGAATCTTTGGCGTCAGTTAGAAAAGGAATTGAAGGACTTGAAAGATCATGAACAGCAAATGAAGCCTAAGAGGACAAAAATAATATCGGATTTGCTGATATCGGTTTCGAAGTCTGAGAGGCAGGAAGCAAGGTTGAAAGTACGACAAGACTCATTGAGACTGGGAAATGTTGGTGTGATCAGAGCTGGAACTGTCATATCTGAGACCTGGGAAGATGGCCAAGCATTAAAGGATCTTAATGCCCAACTTAGACAACTAATAGAAACAAAGGAAGCTATTGAGCGGCAGCGCAAATCATTAAAGAAAAAACAATCTGATAAGGGTGATGGAACAGATGCAGAGACTGGATTACAAGAAGATGATGTTTTTATTCAGGATGAGATCTATAAGTCTCGATTAGCTAGCCTTAAACGAGAAGAAGAAATTATTTTGCGGGAGAGGGATCGGTATGAACTAGAAAAGGGAAGGCTAATACGTGAGATGAAACGCATACGAGATGAGGATGGTTCACGTTTTAACAACTTTCAGATTCTGAACCATCGTTATGCCCTTTTAAATCTTCTTGGAAAGGGTGGATTTAGTGAGGTTTACAAGGCTTTTGATTTGGTGGAGCATAGATATGTTGCTTGTAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATTCGGCATGCAATTCGGGAGTATAATATCCACAAGACCCTTGTGCATCATCACATTGTTCGTTTATGGGACATCTTTGAGATAGATCAAAATACATTCTGCACTATTCTAGAGTACTGTAGTGGGAAGGATCTTGATGCTATCCTTAAAGCAACACCGATATTGCCTGAGAGGGAGGCTAGAGTAATTCTAGTTCAGATTTTTCAAGGCCTTGTTTACTTGAACAAAAGAACACAGAAGATTATTCATTATGATTTGAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGTGTTGCCAAAGTGACTGATTTTGGTCTCAGCAAGATAGTGGAGGATGATGTGGGATCTCAGGGTATGGAACTAACATCCCAGGGAGCGGGAACTTATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTATTCTATCAAATGCTTTTTGGAAAACGTCCTTTTGGGCATGACCAAACCCAAGAGCGTATACTTCGAGAAGACACAATTATTAAGGCTCGCAAGGTTGAATTCCCTTCTAGACCTGCTGTTTCTAATGAGGCAAAGGATTTTATTCGGCGATGTCTAACATATAACCAGGCTGAGAGACCGGATGTATTGACGATTGCTCAAGATCCATATCTTTTGTACTTTAAGAAGTAA 2055 0.42 MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKASSTAATLPSAQQSTWALVPSAGKFGGAAEDLVGPSTSSDSDDDNGGEFLIQANTTQKRQKLQEDDNSNNFKHVEVVTDGRQTSLEAVETKMTADVNRKKHGRGRGNSGSGRGRSPRVNDQTRAQISPPTVLASNGQLENANHKEGRFKDQSRNDSCASLEEENASLRAKVVALEEDLRKSKQDTSEYQNLWRQLEKELKDLKDHEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLRQLIETKEAIERQRKSLKKKQSDKGDGTDAETGLQEDDVFIQDEIYKSRLASLKREEEIILRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDQNTFCTILEYCSGKDLDAILKATPILPEREARVILVQIFQGLVYLNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGKRPFGHDQTQERILREDTIIKARKVEFPSRPAVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLLYFKK 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2479 684 SUPERFAMILY Protein kinase-like (PK-like) 398 680 IPR011009 -
Glsi10g2479 684 MobiDBLite consensus disorder prediction 60 196 - -
Glsi10g2479 684 Gene3D Transferase(Phosphotransferase) domain 1 397 683 - -
Glsi10g2479 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Glsi10g2479 684 Coils Coil 357 391 - -
Glsi10g2479 684 ProSitePatterns Protein kinases ATP-binding region signature. 412 435 IPR017441 GO:0005524
Glsi10g2479 684 PANTHER MIXED LINEAGE PROTEIN KINASE 11 681 - -
Glsi10g2479 684 MobiDBLite consensus disorder prediction 69 93 - -
Glsi10g2479 684 ProSiteProfiles Protein kinase domain profile. 406 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2479 684 Coils Coil 300 330 - -
Glsi10g2479 684 MobiDBLite consensus disorder prediction 177 192 - -
Glsi10g2479 684 FunFam Serine/threonine-protein kinase TOUSLED 397 684 - -
Glsi10g2479 684 MobiDBLite consensus disorder prediction 147 176 - -
Glsi10g2479 684 MobiDBLite consensus disorder prediction 108 125 - -
Glsi10g2479 684 Coils Coil 192 243 - -
Glsi10g2479 684 MobiDBLite consensus disorder prediction 1 22 - -
Glsi10g2479 684 Pfam Protein kinase domain 407 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2479 684 CDD STKc_TLK 405 678 - -
Glsi10g2479 684 SMART serkin_6 406 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2479 Glsi-ChrGlsi10 24529731 24541576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2479 389 679 MAP Kinase Kinase Kinase AT3G13530 28.571 3.16e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Glsi10g2479 Pkinase 9.6e-60 CL0016