Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2466 ATGCTTAGGCTTCCATGCTTTTGTTGTGCACTAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGGATCAAACCCTACATGTGTAGAAAATGTGGCAAAGCATTTTCAGTGAAAGGGTTTAGAAGGGACCAATTGAAGGTTCAAGTGACCTCAACTCGTGCTTTAAAGATCAGTGCTCAACGACACATCACTGAGAACAAATGGCGCCGTGTTTATAAGGAATTCCCCGTTCCTTCTGATTGTGACACCAATGAGCTCAGTGCCAAGTTTGAAGGTGGTGCTCTCTATGTCAAGTTTCCCAAAGTAACTATTCCTTCTAAGCCACAGCCACAAGAAACAACAACAACAAAGCCCTCAGAAAGAGAACGGGATGATGAACAAAAGGCTGCAAAAGAGGATCAAGCAAAAGCACAGACCCCACCACCCGAGGAAGAGAAGGAAAAGAGTAAAACTGAAGCAGATGGTAGCAATGAAACCCAGAAGAAGATGAAGACTAACGGGGTTGAGAAAGCAGATCAAGAAGGTATGGCCTCTAAAGCTCATGATGAAAAGCCAAAAGCAAAGGCTGTCACAAGATCAAAAACTAGGGTTTTGGACTTCACTTTCAGTTTAAGACCAACTGCTGATTAG 684 0.4357 MLRLPCFCCALGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFSVKGFRRDQLKVQVTSTRALKISAQRHITENKWRRVYKEFPVPSDCDTNELSAKFEGGALYVKFPKVTIPSKPQPQETTTTKPSERERDDEQKAAKEDQAKAQTPPPEEEKEKSKTEADGSNETQKKMKTNGVEKADQEGMASKAHDEKPKAKAVTRSKTRVLDFTFSLRPTAD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2466 227 MobiDBLite consensus disorder prediction 119 227 - -
Glsi10g2466 227 SUPERFAMILY beta-beta-alpha zinc fingers 29 63 IPR036236 -
Glsi10g2466 227 Gene3D - 51 156 IPR008978 -
Glsi10g2466 227 CDD ACD_sHsps-like 53 119 - -
Glsi10g2466 227 PANTHER ZINC FINGER PROTEIN WIP2 1 61 IPR043584 GO:0003700|GO:0010468
Glsi10g2466 227 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 30 134 IPR002068 -
Glsi10g2466 227 Pfam Hsp20/alpha crystallin family 53 129 IPR002068 -
Glsi10g2466 227 SUPERFAMILY HSP20-like chaperones 53 121 IPR008978 -
Glsi10g2466 227 MobiDBLite consensus disorder prediction 134 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2466 Glsi-ChrGlsi10 24113075 24126813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2466 1 57 C2H2 Transcription Factor Family AT3G57670 85.965 2.94e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g2466 HSP20 1.1e-06 CL0190