Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2445 ATGAAGGAATTTGTTCTTTATGCTTGTGTACTACTCCATGTGAGTCTTTTTGCTTTGCTTTCCTATAGCAAAGCCAATCAGGCAGATAATCTTAATGAGTTAATCCAGTCCAGGAGATCAAAAAAGCTTCCTCTAACACTTTCTTGGGAAGAGGAGGATGTGTCCAAAGAGCATTCTTCAGTTTATGTTTCAACCCAAGAGGGGCTAAGACAGGCTGACAAGATTTCTGCAATGCCTGGCCAGCCATATGGGGTGAATTTTGATCAGTATGCAGGCTATGTCACAGTTGATCCAAAGGCTGGAAGAGCTCTTTTCTATTATTTTGTGGAGTCTCCCCAAAACTCTACAACTAAACCCTTGGTGTTGTGGCTCAATGGAGTTGACTTAAGACATAATGATCATATGATTTTTTTTCCCATTTGCATACACATGGCCAGGTTGCTCCTCACTGGGGTTGGGGGGCCTTGGAGGAACTGGGACCCTTTCGAGTCAACTCTGATGGCAAAACACTATTCCGGAATAAATATGCTTGGAACAATGTGGCAAATATACTGTTCTTGGAATCTCCTGTTGGAGTGGGGTTTTCCTACTCATACTAATTCTGACTATGAAAGAGCAGGCGATAAGAACACAGCCAATGACGCCTATGTCTTCCTAATCAACTGGCTAGAGAGGTTTCCACAATACAAATCTAGGAATTTTTTCATAACCGGCGAGAGCTATGCTGGTCATTACGTGCCTCAGCTTGCTTACACCATTTTGGTCAACAATAAACTCCAAAACCAAACCATTATTAACCTCAAAGGCATTGCTATAGGGAATGCATGGATAGATGATGCTACAAATACAAAGGGGCGATTTGATTACTTATGGACTCATGCTTTGAGCTCAGACGAAACCCACGAAGCCATTGATAAGTTCTGTGACTTTGCTTCTGAAAATGCTTCTGACGAATGTGTTAACTTAACAAGAAGGGCCCTCACGGAGAAGGGAAACATAGATTTTTATAACATTTATGCTCCACTTTGTCATGACTCTTCCCTCAGAAATGGCTCTATTGGTTCTGTTTATGATTTTGATCCCTGCACTGGTAATTATGTGAAAGCCTATCTAAATAACCCAGAGGTCCAGCTAGCTCTTCACGCAAAACACACAAATTGGAGCCATTGCAGAAGTTATAACTGGACAGATAGCCCAACTACCATCCTACCCACCATTAAGTATCTAATAGCAAGTGGCATTAGGCTGTGGATATACAGTGGAGACACAGATGCAGTTGTGCCGGTAACATCTTCAAGGTACTCAATCAACACCCTCAAGCTGCCTGTTCTGGTTTCTTGGCGGCCATGGTACTCTGGAAAGGAGGTAGGAGGATATGTTGTGGCATACAAGGGAGTAATATTTGTGACTGTAAGAGGAGCTGGGCATTTGGTTCCAAGTTGGCAACCAGCAAAGGCCCTAACTCTTATCACATCATTCCTTAAAAAAGCTCTACCTCCTTTTTCACCATGGCCTTCTGCTAAGGCCCCACCACCAAGCTTCCACTAA 1548 0.4296 MKEFVLYACVLLHVSLFALLSYSKANQADNLNELIQSRRSKKLPLTLSWEEEDVSKEHSSVYVSTQEGLRQADKISAMPGQPYGVNFDQYAGYVTVDPKAGRALFYYFVESPQNSTTKPLVLWLNGVDLRHNDHMIFFPICIHMARLLLTGVGGPWRNWDPFESTLMAKHYSGINMLGTMWQIYCSWNLLLEWGFPTHTNSDYERAGDKNTANDAYVFLINWLERFPQYKSRNFFITGESYAGHYVPQLAYTILVNNKLQNQTIINLKGIAIGNAWIDDATNTKGRFDYLWTHALSSDETHEAIDKFCDFASENASDECVNLTRRALTEKGNIDFYNIYAPLCHDSSLRNGSIGSVYDFDPCTGNYVKAYLNNPEVQLALHAKHTNWSHCRSYNWTDSPTTILPTIKYLIASGIRLWIYSGDTDAVVPVTSSRYSINTLKLPVLVSWRPWYSGKEVGGYVVAYKGVIFVTVRGAGHLVPSWQPAKALTLITSFLKKALPPFSPWPSAKAPPPSFH 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2445 515 ProSitePatterns Serine carboxypeptidases, histidine active site. 466 483 IPR033124 GO:0004185
Glsi10g2445 515 ProSitePatterns Serine carboxypeptidases, serine active site. 236 243 IPR018202 GO:0004185
Glsi10g2445 515 Gene3D - 402 495 - -
Glsi10g2445 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 222 247 IPR001563 GO:0004185|GO:0006508
Glsi10g2445 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 466 479 IPR001563 GO:0004185|GO:0006508
Glsi10g2445 515 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 75 483 IPR001563 GO:0004185|GO:0006508
Glsi10g2445 515 FunFam Carboxypeptidase 402 496 - -
Glsi10g2445 515 SUPERFAMILY alpha/beta-Hydrolases 68 497 IPR029058 -
Glsi10g2445 515 Gene3D - 362 397 - -
Glsi10g2445 515 Pfam Serine carboxypeptidase 79 126 IPR001563 GO:0004185|GO:0006508
Glsi10g2445 515 Pfam Serine carboxypeptidase 194 495 IPR001563 GO:0004185|GO:0006508
Glsi10g2445 515 Gene3D alpha/beta hydrolase 70 345 IPR029058 -
Glsi10g2445 515 FunFam Carboxypeptidase 359 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2445 Glsi-ChrGlsi10 23174123 23182670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2445 367 494 Calmodulin-binding Proteins AT2G22960 27.068 3.44e-11 60.5