Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2414 ATGGCGCATAGGTTGCTGAGGGACCATGAAGCTGATGGTTGGGAACGCTCTGACTTTCCCATCATCTGTGAATCATGCCTCGGTGACAACCCGTATGTTCGCATGACAAGAGCAGAGTATGATAAGGAGTGCAAGATTTGTACACGGCCATTTTCTGTTTTCAGATGGAGACCTGGTCGGGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGTTTGCCTTCTGGATCTTGAATATGGACTACCAATTCAAGTCCGAGACACTGCTCTCAGCATTAGTTCCCATGATTCCATTCCTAAGAGTGATGTTAACAGGGAGTATTTTGCTGAAGAGCACGACCGTAGGGCTAGAGCTGGTTTAGATTATGAATCCTCGTATGGGAAAGCACGCCCCAATGATACCATTTTGAAGCTTCAAAGGACAACGCCATATTACAAAAGAAACCGGGCACATGTTTGTAGTTTCTACATAAGGGGCGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGGCATGAGATGCCTGTAACCGGGGAGCTATCACAACAAAATATTAAAGATCGTTATTACGGAGTGAATGATCCAGTGGCATTGAAGCTACTCGGCAAGGCAGGAGAGATGGCCTCTTTGAAGCCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGGCTTGATGCTAGGGTCACTGAGCAGGATCTGCGGGATAATTTTTATGCTCATGGTGAAATTGAATCCATTAAGATGGTTCTCCAAAGGGCTTGTGCTTTTGTGACCTACACAACCAGAGAAGGTGCAGAAAAAGCAGCGGAAGAGCTCTCCAATAAACTGGTTATTAAAGGCCTGAGGCTTAAGCTGATGTGGGGCAGGCCTCAGTCGGCAAAACCTGAGTCCGAAAGCTCAGATCAAGCAAGGCAGCAGGCTTCAGTGGCTCATAGCGGGTTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAGGACCAAGCCCAAGGAATGCATTACTATAACGTTCCACCTCCTCCTCAGCAGGAAAAAAGCTATTATCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCACCTCAAGATGGTCCTCCTGGTGGGCCAACCGGGTCAGCAGAGACCAAACCCAGTTTGGAGAAGCAGCAACTGCAGCATTATGCCCATCCGATAATGCCGCCACCACCTGGGCAATATCATCATCAGTATTATCCTCCATATGGACATATGCCACCCATGTCCCCTTATCAACAGTACCCACCACCACCATACAACACCGCCATGGCTCCATCTCAGCCATCATCTGTAAATCAGCCCTTTCAGCACTCTATGCAGCCAGGTTCGTCTTCTCACTCAGGGCCTGCCCAGATGGGGTCTGCACCAGCAGAATCTGGAACATCAACATCAGGATCACGGCAGTAG 1458 0.4774 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFSVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPIQVRDTALSISSHDSIPKSDVNREYFAEEHDRRARAGLDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMASLKPPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPESESSDQARQQASVAHSGLLPRAVISQQQNQDQAQGMHYYNVPPPPQQEKSYYPSMDPQRMGALIPPQDGPPGGPTGSAETKPSLEKQQLQHYAHPIMPPPPGQYHHQYYPPYGHMPPMSPYQQYPPPPYNTAMAPSQPSSVNQPFQHSMQPGSSSHSGPAQMGSAPAESGTSTSGSRQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2414 485 Gene3D - 149 208 - -
Glsi10g2414 485 MobiDBLite consensus disorder prediction 334 394 - -
Glsi10g2414 485 SMART rrm1_1 229 297 IPR000504 GO:0003723
Glsi10g2414 485 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Glsi10g2414 485 Gene3D - 212 311 IPR012677 -
Glsi10g2414 485 MobiDBLite consensus disorder prediction 441 485 - -
Glsi10g2414 485 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 379 IPR039171 GO:0003723
Glsi10g2414 485 MobiDBLite consensus disorder prediction 300 321 - -
Glsi10g2414 485 MobiDBLite consensus disorder prediction 304 320 - -
Glsi10g2414 485 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
Glsi10g2414 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Glsi10g2414 485 MobiDBLite consensus disorder prediction 426 485 - -
Glsi10g2414 485 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Glsi10g2414 485 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Glsi10g2414 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Glsi10g2414 485 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Glsi10g2414 485 Pfam Torus domain 138 194 IPR032297 -
Glsi10g2414 485 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Glsi10g2414 485 CDD RRM_RBM22 227 300 - -
Glsi10g2414 485 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2414 Glsi-ChrGlsi10 21573686 21578253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2414 218 289 Eukaryotic Initiation Factors Gene Family AT1G49760 35.897 4.88e-06 47.4