Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2413 ATGAGTGAGCCTCTACCTGAGAGCATCTCTTGTCACTTGTTTTCATCGGAGACGCCGACCATGGTTGCTGCCAAGAAAACCAAGAAGACCCATGAGAGCATTAACAACAGGCTCGCTCTTGTTATGAAGAGCGGGAAATATACCCTGGGTTACAAAACGGTTCTGAAATCGCTGAGGAACTCTAAAGGAAAACTGGTTATCATTGCTAACAATTGCCCGCCTTTAAGGAAATCAGAGATAGAGTATTACGCTATGCTTGCAAAAGTGGGTGTGCATCATTATAATGGAAACAATGTGGATTTGGGCACAGCTTGTGGCAAATACTTCAGAGTGTGTTGCCTCAGCATTATTGATCCTGGGGATTCGGATATTATCAAGACAATGCCTGGCGAACACTAG 399 0.4436 MSEPLPESISCHLFSSETPTMVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRNSKGKLVIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTMPGEH 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2413 132 ProSitePatterns Ribosomal protein L30e signature 2. 100 120 IPR022991 -
Glsi10g2413 132 PANTHER RIBOSOMAL PROTEIN L30 21 130 IPR039109 GO:0003723
Glsi10g2413 132 ProSitePatterns Ribosomal protein L30e signature 1. 44 68 IPR022991 -
Glsi10g2413 132 Hamap 50S ribosomal protein L30e [rpl30e]. 32 129 IPR000231 GO:0003723|GO:0003735|GO:0022625
Glsi10g2413 132 Gene3D - 22 128 IPR029064 -
Glsi10g2413 132 FunFam 60S ribosomal protein L30 22 128 - -
Glsi10g2413 132 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 33 125 IPR004038 -
Glsi10g2413 132 SUPERFAMILY L30e-like 33 127 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2413 Glsi-ChrGlsi10 21569204 21573426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2413 21 132 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 84.821 1.27e-70 205