Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2375 ATGGGAAACTCTTGTAGAAAACCCGTTGCTCATGTGTCTTCTTCTAATATTTCTGGAAATGCAAAGTCTCAAAGCAAGACAAAGCAGAATTCAAATTCTTCAGAACCAGACCGAAAAGTTGCATTGCAGAGTTTAGAACCAAATATTGACAGATTTATCTCTGATAACCTTAAATCCTTCAGCTTCATTGATCTAAAGGAAGCCACAAAGAACTTTCGACAAGAAAACTTGATTGGTGAGGGAGGCTTTGGGTTTGTTTTCAAGGGATGGATTGACGAGAACTCCTTTGCTCCCACAAAACCAGGGAGTGGAATCATGGTGGCCATTAAGAAACTTAAGCCCGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGCCAACTTCACCATGAAAATCTGGTGAAACTTGTTGGTTATTGCTCAGATGCTAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAGAATCATTTATTCAGAAAAGGTGTTCAACCCATAGCCTGGGTTACACGGATCAATATTGCAATTGGAGTTGCAAGAGGATTAGCCTTTTTGCATACACTGGATGCAAACGTTATTTATCGTGATTTAAAGGCTTCCAACATTTTACTTGGTTCGGATTTCAATGCAAAGCTTTCAGATTTTGGGTTGGCAAGAGATGGTCCCACTGGAGATAACACTCATGTTTCAACAAGAATTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCACTTGACCCCAAGGAGTGATGTATACAGCTTCGGTGTTGTGTTGTTAGAGTTACTAACTGGAAGACGGGCAATAGAGGGTGACAGACCTGGAACTGCACAGGAAACTCTGGTGGATTGGGCAAAGCCCTTCCTGAGTGACAGCAGGAGAGTTTCGAGACTGATGGATACTAGGCTGGGTGGTCAATACTCCAAGAAAGGGGCCCAAGCTGTGGCTACACTTGCACTGCAATGCCTAAATACAGATCCCAAACATAGACCAACTATGGTAGATGTTCTAGCCACATTGGAAGGACTCTATTCTTCAAATTCAATCCTAAAGACCCCAAAATCTGGGACTCCGAATCATACAAAGCATTCTAGTCATTCCCAAAAGTCAGTGGGAAAAACAAAGTAA 1167 0.419 MGNSCRKPVAHVSSSNISGNAKSQSKTKQNSNSSEPDRKVALQSLEPNIDRFISDNLKSFSFIDLKEATKNFRQENLIGEGGFGFVFKGWIDENSFAPTKPGSGIMVAIKKLKPESFQGHKEWLAEVNYLGQLHHENLVKLVGYCSDAKNRLLVYEFMQKGSLENHLFRKGVQPIAWVTRINIAIGVARGLAFLHTLDANVIYRDLKASNILLGSDFNAKLSDFGLARDGPTGDNTHVSTRIIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAIEGDRPGTAQETLVDWAKPFLSDSRRVSRLMDTRLGGQYSKKGAQAVATLALQCLNTDPKHRPTMVDVLATLEGLYSSNSILKTPKSGTPNHTKHSSHSQKSVGKTK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2375 388 FunFam Serine/threonine-protein kinase BIK1 39 157 - -
Glsi10g2375 388 Pfam Protein tyrosine and serine/threonine kinase 75 352 IPR001245 GO:0004672|GO:0006468
Glsi10g2375 388 MobiDBLite consensus disorder prediction 1 38 - -
Glsi10g2375 388 Gene3D Phosphorylase Kinase; domain 1 48 157 - -
Glsi10g2375 388 SUPERFAMILY Protein kinase-like (PK-like) 49 354 IPR011009 -
Glsi10g2375 388 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2375 388 ProSitePatterns Protein kinases ATP-binding region signature. 78 111 IPR017441 GO:0005524
Glsi10g2375 388 PANTHER OS01G0588500 PROTEIN-RELATED 26 355 - -
Glsi10g2375 388 MobiDBLite consensus disorder prediction 8 38 - -
Glsi10g2375 388 CDD STKc_IRAK 78 356 - -
Glsi10g2375 388 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g2375 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Glsi10g2375 388 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 158 367 - -
Glsi10g2375 388 MobiDBLite consensus disorder prediction 362 378 - -
Glsi10g2375 388 Gene3D Transferase(Phosphotransferase) domain 1 158 377 - -
Glsi10g2375 388 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2375 Glsi-ChrGlsi10 20958248 20963750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2375 27 353 Glycoside Hydrolase AT3G07070 48.503 1.03e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi10g2375 PK_Tyr_Ser-Thr 6.2e-49 CL0016