Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2362 ATGGTACCCGAGATGGATTCTAATTCTGACCAAGAAAAGAGCACGGTTTCTAATCAAGAAAGGGAATTTTGTGATCAAGAAAACGAGTTCGGCAATGGGTTTGAGCAGATGATGGAAGAAAATAAGCAGGAAGAAGAAGAAGGGTTAGATCAAGAGTCCATGGCGCAACCTCCGGAAGCTGAAGCAGAAGCAGAAGCAAACTCAGCAATTAGAGTCTGTGATTTTTGTGGAAGAACGTTTGGTTCGGGAAAAGCATTGGGAGGACACAGAAGATTCCACTTTCAAGCTCTAAGAAAATTAAAACAACTGGATCCTCCTCAGAAGAAGGTGAAAATTCGTCTCCCAAAAAAACCCAAGCCTAATTCTGATCACCATCACCATCACGATGATGATATGAAATTGCACACTTTGATTATTCCTGAAAATAGTGGAAAACCCTCTTGTTGTCTTTGTAAAAAGGATTTCCCATCGAAGAAGTCTCTTTTTGGGCACATGAGATCCCATCCTGAGAGGGAATGGAGGGGTGTGATTCCTCCCATTAATTCTTCTGCTTCTTCTATTCCAGAAGAAGAAGAAGAAGAAAATAATGGTAGAACAGTTTCTGCTTCTGCACCAAATGGGTTGGATGTGATTGATTTATTAGAGTTTTGTACTCCAAGTTGGCTTAAGAAAGATAAGAGAGGAAGAAGGTGTATTGGAGGTGCTGAGGCTGCTCTGAACCTCGTGTTTCTCTCTAAGGGAATTCGGTCTGAGTCTGAGAATTCTGATTCTCAGCTTGAAGAGGGTGCAATATTAATGGAGGAGGTGAAGTCCAAGAGTCCTAAGAAAAGGAAGATTGATGATAATGATGATGAATCAAGTGGAAAAAATCATGGGAGGGAGATGAAAGTGCATAAGAAAAGAGGTTCATTAGGAAGCAAAGATGAGGATAGTGTTGGTGAATCTGAAACTGATCATAAGGTTTTTTCTGAATCTGGGTATGGTGGAAATTCAGTGAGAATGGATGATCATGAAGAGGAGGAGAATAAAAAGAAGGGAAAGAAGTTGTTGTTGAAGAGTCCTAAGCAAAGGAGGAATGGCGATGATGATGATCCATCAAATAGAAAAAAGAATGTGAAGGAGATGAAAGTGTATAAAAAAAGGGGTTTCGGAAGCAAAACTGGTCAGGATATTGCCGGTAAATATGGTTATAATGGAGGATTTTCTGTATCTGGTTATGTTGTAAACTTAGAGAACATAGATAATATTGAGGAGGAGAAGGATAATGGAGGAAGAAAGGCTTTTTCTGAATCTGGGTATTGTGAAAATCCAGTGAAAATGGATAATGAGGAGGAGAAGGTGAAGGAGAGTGGAAAGAAGAGAAAGAAGAAGAAGAATTTGAAGATGAAGTCTAAAGAAAAGCCAGAATCTGAAGACAAGGATTTGCTGATTAAGACTCTGAAGGAATCTGCACCTAATAGCTATAAATGTAGTTTCTGTGGCAAATCTTTCTCAACTTTCCAAGCCTTAGGGGGACACAGATCCAGACACAACAACAAAGAGAAGATGAAGAAGAACACTAGCCCTGATCAAAATGTTATGGAGACTAGGGTAATTTGCAGGGAAGAATTTGCCAGTACTAGTGCACCAATATTCAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAACACCAGGTGAAGAATTAGAAGGATTAGAATCTTCTTATAATGTTCAAGAATTGAGATCACAGGCAAGAATAACCTTGGATTTTGATCTGAATGAGCCTTATGTTAGCAACTAA 1782 0.3928 MVPEMDSNSDQEKSTVSNQEREFCDQENEFGNGFEQMMEENKQEEEEGLDQESMAQPPEAEAEAEANSAIRVCDFCGRTFGSGKALGGHRRFHFQALRKLKQLDPPQKKVKIRLPKKPKPNSDHHHHHDDDMKLHTLIIPENSGKPSCCLCKKDFPSKKSLFGHMRSHPEREWRGVIPPINSSASSIPEEEEEENNGRTVSASAPNGLDVIDLLEFCTPSWLKKDKRGRRCIGGAEAALNLVFLSKGIRSESENSDSQLEEGAILMEEVKSKSPKKRKIDDNDDESSGKNHGREMKVHKKRGSLGSKDEDSVGESETDHKVFSESGYGGNSVRMDDHEEEENKKKGKKLLLKSPKQRRNGDDDDPSNRKKNVKEMKVYKKRGFGSKTGQDIAGKYGYNGGFSVSGYVVNLENIDNIEEEKDNGGRKAFSESGYCENPVKMDNEEEKVKESGKKRKKKKNLKMKSKEKPESEDKDLLIKTLKESAPNSYKCSFCGKSFSTFQALGGHRSRHNNKEKMKKNTSPDQNVMETRVICREEFASTSAPIFSEEEEEEEEEATPGEELEGLESSYNVQELRSQARITLDFDLNEPYVSN 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2362 593 Pfam C2H2-type zinc finger 148 170 - -
Glsi10g2362 593 Pfam C2H2-type zinc finger 488 510 - -
Glsi10g2362 593 Pfam C2H2-type zinc finger 72 93 - -
Glsi10g2362 593 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 118 591 IPR044653 GO:0003700
Glsi10g2362 593 MobiDBLite consensus disorder prediction 331 347 - -
Glsi10g2362 593 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 417 474 - -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 267 292 - -
Glsi10g2362 593 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Glsi10g2362 593 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Glsi10g2362 593 SMART c2h2final6 488 510 IPR013087 -
Glsi10g2362 593 SMART c2h2final6 146 168 IPR013087 -
Glsi10g2362 593 SMART c2h2final6 71 93 IPR013087 -
Glsi10g2362 593 ProSiteProfiles Zinc finger C2H2 type domain profile. 488 515 IPR013087 -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 175 203 - -
Glsi10g2362 593 Gene3D Classic Zinc Finger 469 544 - -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 1 65 - -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 354 383 - -
Glsi10g2362 593 ProSitePatterns Zinc finger C2H2 type domain signature. 490 510 IPR013087 -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 267 391 - -
Glsi10g2362 593 SUPERFAMILY beta-beta-alpha zinc fingers 147 510 IPR036236 -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 542 568 - -
Glsi10g2362 593 Coils Coil 440 460 - -
Glsi10g2362 593 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 299 321 - -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 545 561 - -
Glsi10g2362 593 MobiDBLite consensus disorder prediction 504 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2362 Glsi-ChrGlsi10 20671831 20673731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2362 73 179 C2H2 Transcription Factor Family AT2G26940 39.474 1.13e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g2362 zf-C2H2_6 1.3e-08 CL0361