Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2349 ATGTCAAGTGGAGCAACACACTGGTGTTATGGGTGCAGCCAGCCGATTGTGCTTGAAGGGAGAGAAGCCATTTGCCCTTACTGTCATGAGGGTTTTGTGCAAGACATTAATGAGATGCAAGCCTTTACACCACATGATGCTTTGGAAGAGTTTCATCAAATGCCTGACATTTTCGATGCTATAAATGCTTTTATGGGGAGACAGGGTTCTGAACCGAGGTTTGGGCTTATAGATGCTTTTGATAATTTGATGAGGCAGAGAATGGCTGGACGAATCCCAAACTTTGATGTTAGACCAAGATCTGGTGCAGCATCAGTTCCTGAACAGAGTCAAGGGTTTTTTAGTTCTGGTCCTTATTTAATATTTCGTGGTCAAGTTCCTGGATTCACCTTGTCTAATGGCGGTCCTAGGCATGCTGATTTTGGTGACTACTTTATGGGCCCTGGACTGGAAGAACTTATTGAACAGCTCACCATGAATGATCGTAGAGGTCCCCCTCCAGCATCACATTCTTCAATTGATGCAATGCCTACAATTAAAATCACACAGACACATCTTCGCTCTGATTCACACTGTCCAGTCTGTAAAGAAAGATTTGAACTAGGCTCTGAGGCAAGGCAGATGCCATGTGACCATATTTATCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAACTGCCACCTCAAGGATACGGTAGTTCTCGTGGTGGTAGAAGTAGGGGAGTAAGGACTGCCAATAGCAGCAATGACAATGTTAGCTCGGGGGCAAGGGCGAATAGCCAGCAGAGCCAGGGAAGGAGAAATCTGCTATCTGCTTTTTGGCCATTCCGGTCTTCTAGTTCAAACACTAATCATTATGCTGAGACTGGGGGAAGCAGCTCTTCCACAACTCATGACCAAAATAATGGAACGGGTTATAGAGGATGGCCATTTGATTACTAA 972 0.4486 MSSGATHWCYGCSQPIVLEGREAICPYCHEGFVQDINEMQAFTPHDALEEFHQMPDIFDAINAFMGRQGSEPRFGLIDAFDNLMRQRMAGRIPNFDVRPRSGAASVPEQSQGFFSSGPYLIFRGQVPGFTLSNGGPRHADFGDYFMGPGLEELIEQLTMNDRRGPPPASHSSIDAMPTIKITQTHLRSDSHCPVCKERFELGSEARQMPCDHIYHSDCIVPWLVQHNSCPVCRVELPPQGYGSSRGGRSRGVRTANSSNDNVSSGARANSQQSQGRRNLLSAFWPFRSSSSNTNHYAETGGSSSSTTHDQNNGTGYRGWPFDY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2349 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 237 - -
Glsi10g2349 323 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Glsi10g2349 323 MobiDBLite consensus disorder prediction 240 275 - -
Glsi10g2349 323 FunFam E3 ubiquitin-protein ligase RING1-like 156 239 - -
Glsi10g2349 323 Pfam Ring finger domain 191 233 IPR001841 -
Glsi10g2349 323 MobiDBLite consensus disorder prediction 249 275 - -
Glsi10g2349 323 SUPERFAMILY RING/U-box 172 239 - -
Glsi10g2349 323 MobiDBLite consensus disorder prediction 293 314 - -
Glsi10g2349 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 239 IPR013083 -
Glsi10g2349 323 CDD RING-H2_RNF126-like 192 233 - -
Glsi10g2349 323 SMART ring_2 192 232 IPR001841 -
Glsi10g2349 323 MobiDBLite consensus disorder prediction 293 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2349 Glsi-ChrGlsi10 20270932 20271903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2349 121 248 C3H Transcription Factor Family AT5G01980 42.308 1.16e-28 113