Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2345 ATGCGTAAGATTCGAGAGTACAACGGAAGCAGGGGAGCCAATCCAAAACGGTTTGATTTAGACGTCAAATCATCAATAAGAGCCAAGCAACTCCATCCAACCTTTGACTACATGGATTCTGGTAGTGGTATCAATGCCCAGCTGGCTCGGATTAAGAAAATCATGCAGACTGATGAGGATGTAGGGAAGATTGCTATGGCTGTGCCTCTTCTAGTTTCTAAAGCACTTGAACTATTTTTGCAAGATCTATGTGACCGGACATATGATATAACACTGAGGAGGGGGGCAAAGACCATGAATTCTTTTCATCTAAAGCAGTGTGTACAGAATTGTTATGTCTTTGATTTTCTGAAAGATGTTGTCCAAAAGGTTCCTGATTTAGGTGGTTCTGTTGCTAATGGTGATGATAATATTACTACGAAGAGAAGGAAAGTTGTTGAAGGCGATGAAAATAACAGCAGTGATGAGTCGAAGAGAATGCATGGAGCGTTGATTTCTGTGAGGAATGATTGTACATGCATACTCCTTTGCATTTCTCTTTTAAGTTGTGATAACATACTTAATTCATTAGTGAAGTTTTCAAGGGGCTTGCGAATGCAGCCAGAGCCTGGGCGTATTGGCGGCAGAGGAAGGGGTAGGGGAAGGGGCAGGGGCAGGGGCAGAGGGAGGGGACGTGGGCGAGGAAGTAGAACAGTAGATCAAGAGATGACTGCAGTCAAGGCTGAAGACAGTCCTGATGGTAAGTGCACTCGAAGCAGTGAAAGCATGGAAGATGGGATAGAACCTGAAGAAGATAAGGAGATTGTTCCAGTTAGCAAGATGGCAGAAGTGTCCATACGAAATTTTGACTTAAACATGGACCCGGACGAGAATGGGGATTCACCAGCCATAACAGCTCCTGTCTTGGTTAGTTCACCTGCAAAATTGGCGTCAGAATTGAAGCATGAGGAATACCCTGGCTGGTCACTGTCTGATATGGAAAAAATGGCCATTGATCCCATTCAACTGGCCAACTTAAATAAAACGGCCTATGAATACGAAGATTACGATGAAGAAAGCTAG 1062 0.4397 MRKIREYNGSRGANPKRFDLDVKSSIRAKQLHPTFDYMDSGSGINAQLARIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLRRGAKTMNSFHLKQCVQNCYVFDFLKDVVQKVPDLGGSVANGDDNITTKRRKVVEGDENNSSDESKRMHGALISVRNDCTCILLCISLLSCDNILNSLVKFSRGLRMQPEPGRIGGRGRGRGRGRGRGRGRGRGRGSRTVDQEMTAVKAEDSPDGKCTRSSESMEDGIEPEEDKEIVPVSKMAEVSIRNFDLNMDPDENGDSPAITAPVLVSSPAKLASELKHEEYPGWSLSDMEKMAIDPIQLANLNKTAYEYEDYDEES 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2345 353 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 45 149 - -
Glsi10g2345 353 MobiDBLite consensus disorder prediction 226 257 - -
Glsi10g2345 353 MobiDBLite consensus disorder prediction 210 225 - -
Glsi10g2345 353 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 48 108 IPR003958 -
Glsi10g2345 353 Gene3D Histone, subunit A 44 123 IPR009072 GO:0046982
Glsi10g2345 353 FunFam dr1-associated corepressor homolog 40 123 - -
Glsi10g2345 353 MobiDBLite consensus disorder prediction 199 266 - -
Glsi10g2345 353 SUPERFAMILY Histone-fold 55 125 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2345 Glsi-ChrGlsi10 20204853 20209486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2345 49 159 CCAAT-HAP5 Transcription Factor Family AT3G12480 63.248 5.23e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi10g2345 CBFD_NFYB_HMF 8.7e-16 CL0012