Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2308 ATGCCAGCACCTTTCCTGACAAAGACATTCCAGCTTGTGGATGACCCTTGCACTGACCACATTGTGTCTTGGGGTTCAGATGAGACCACTTTTGTTGTGTGGAGACCCCCGGAGTTTGCTAGAGATCTCCTTCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTTGTTAGACAGCTCAATACCTATGGTTTCAAGAAGGTGGTTGCAGATAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCATCTTCTGTGTGAAATCCACAGAAGAAAAACCCCTCATCACCATCATCATAATCACCACCATGATCAACCACCACAACAGCTTCTTCACCATCATCACCCTGCAGATGAAAGTCTCAGTTGGATTGACTCTACTTCTCCATTATTACTGCCATCTCCTAAATCTGCGGGCACAGATATTCTAACTGCACTTTCTGAAGACAATCAGAGACTGAGGAGAAGAAACTTCATGCTTTTATCAGAGCTCACCCACATGAAGAGACTGTACAATGACATCATATACTTCATCCAAAACCATGTCAAACCAGCTTCAGATCCAGCACCCTTTGAACAAAGAAGCAGATCTGCTATTCCTAAGATCGTAGAATTGGATTCATCATTAACTGCCAAAAGTTGTACTAATTTGGAGGAGTCATTGACGAAATCTACCCAGGAATTAGATGGTTCTGTGAAGCTTTTTGGGGTTCCTCTCAGTGGTAAAAAGAGGTTGCACCCAGAAAACAATATTCATGACAAACAAGAATTCATTGCGTCCCATAATGATTAG 801 0.427 MPAPFLTKTFQLVDDPCTDHIVSWGSDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKTPHHHHHNHHHDQPPQQLLHHHHPADESLSWIDSTSPLLLPSPKSAGTDILTALSEDNQRLRRRNFMLLSELTHMKRLYNDIIYFIQNHVKPASDPAPFEQRSRSAIPKIVELDSSLTAKSCTNLEESLTKSTQELDGSVKLFGVPLSGKKRLHPENNIHDKQEFIASHND 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2308 266 Pfam HSF-type DNA-binding 5 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g2308 266 PRINTS Heat shock factor (HSF) domain signature 5 28 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g2308 266 PRINTS Heat shock factor (HSF) domain signature 43 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g2308 266 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g2308 266 FunFam Heat stress transcription factor B-4 1 95 - -
Glsi10g2308 266 SUPERFAMILY "Winged helix" DNA-binding domain 3 94 IPR036390 -
Glsi10g2308 266 SMART hsfneu3 1 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g2308 266 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 198 IPR027725 -
Glsi10g2308 266 MobiDBLite consensus disorder prediction 95 117 - -
Glsi10g2308 266 ProSitePatterns HSF-type DNA-binding domain signature. 44 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g2308 266 Gene3D - 1 96 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2308 Glsi-ChrGlsi10 19633437 19635285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2308 1 189 HSF AT1G46264 61.353 6.89e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi10g2308 HSF_DNA-bind 8.2e-32 CL0123