Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi10g2295 | ATGGGCAACTGTTGCTCCGGCGGCAGCGATGCCCCGGTCTATGACGATGATAAGGGAGAATCGAACCCGGATAACCAACAGAATGCAGGCAGCTCTCACCCAGAAAACTCGACCACCCCACCACAAACCAAGCCATCTCCTACACCCTCCCCTTCTCCTACGAAGCCTGTAAAACAAGGCCCAATTGGACCTGTCCTTGGGAGACCCATGGAGGACGTAAAAGCCACTTACAGCATAGGGAAGGAACTAGGGAGAGGGCAGTTTGGAGTGACCCATTTGTGCACCCACAAGGCAACGGGTGAGCAATTTGCATGTAAAACCATAGCTAAGAGGAAGCTTGTGAACAAGGAGGACATAGAGGATGTTAGGAGGGAGGTCCAAATCATGCATCACTTGGCTGGGCAGGCTAATATTGTGGAGCTAAAAGGTGCCTTTGAGGATAAGCAATCAGTTCATTTGGTGATGGAGCTTTGTGCCGGGGGCGAGCTCTTCGATCGGATCATTGCCAAGGGCCATTACACGGAACGTGCAGCAGCTCAGTTGTTGAGGACGATAGTTCAAATCGTCCACACTTGCCATTCCATGGGTGTCATTCATAGGGATCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAGAATTCCCCCCTCAAGGCCACCGACTTCGGTCTTTCGGTTTTTTACAAGCAAGGGGAAGTGTTTAAAGACATTGTTGGCAGTGCATATTACATCGCACCTGAGGTCTTGAAGAGGAAGTATGGGCCAGAAGTCGACATATGGAGTATTGGTGTTATGTTATACATTCTTCTTTGTGGTGTTCCTCCATTTTGGGCAGAATCTGAAAATGGGATATTCAATGCCATCTTACGAGCCCAACTTGACTTTTCAAGTGATCCATGGCCCTCCATTTCATCTTCAGCAAAAGATCTTGTAAGGAAAATGTTGACTGCAGATCCCAAGCAGAGAATAACTGCCTACGAAGTGCTGAATCATCCGTGGATCAAGGAAGATGGAGAAGCACCAGATACGCCACTTGACAATGCAGTGCTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTGGCTCTAAGGGTCATCGCTGGGTGCTTATCAGAAGAAGAAATCATGGGCTTGAAGGAAATGTTTAGGGGAATGGACACTGACAATAGTGGAACCATAACAATTGAAGAGCTTAAGCAAGGTCTTGCTAAGCAGGGTACAAAGCTCACTGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAACGGAACGATAGATTATGACGAGTTCATCACAGCAACGATGCATTTGAACCGAATGAACAGAGAAGAACATCTTTATACTGCCTTCCAATACTTTGATAAAGATAATAGCGGGTTCATTACCGTTGAAGAACTAGATCAAGCTCTCAAAGAATTTGGCATGCATGATGGCAGGGATATCAAAGACATCCTTTCAGAAGTTGATTCAGACAATGATGGCAGGATTAACTACGATGAGTTTGCAGCAATGATGAGAAAAGGAAACCCAGAAATCCTAACCAAGAAGAGGCGTAATAATTCATTTGTTTGA | 1599 | 0.4559 | MGNCCSGGSDAPVYDDDKGESNPDNQQNAGSSHPENSTTPPQTKPSPTPSPSPTKPVKQGPIGPVLGRPMEDVKATYSIGKELGRGQFGVTHLCTHKATGEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLAGQANIVELKGAFEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAAQLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGEVFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLCGVPPFWAESENGIFNAILRAQLDFSSDPWPSISSSAKDLVRKMLTADPKQRITAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHLNRMNREEHLYTAFQYFDKDNSGFITVEELDQALKEFGMHDGRDIKDILSEVDSDNDGRINYDEFAAMMRKGNPEILTKKRRNNSFV | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi10g2295 | 532 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 414 | 449 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | ProSitePatterns | EF-hand calcium-binding domain. | 498 | 510 | IPR018247 | - | |
| Glsi10g2295 | 532 | ProSitePatterns | EF-hand calcium-binding domain. | 427 | 439 | IPR018247 | - | |
| Glsi10g2295 | 532 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 197 | 209 | IPR008271 | GO:0004672|GO:0006468 | |
| Glsi10g2295 | 532 | SUPERFAMILY | EF-hand | 375 | 515 | IPR011992 | - | |
| Glsi10g2295 | 532 | Pfam | Protein kinase domain | 77 | 335 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi10g2295 | 532 | Gene3D | Phosphorylase Kinase; domain 1 | 79 | 162 | - | - | |
| Glsi10g2295 | 532 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 378 | 413 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | ProSitePatterns | EF-hand calcium-binding domain. | 463 | 475 | IPR018247 | - | |
| Glsi10g2295 | 532 | Gene3D | - | 347 | 518 | - | - | |
| Glsi10g2295 | 532 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Glsi10g2295 | 532 | FunFam | Calcium-dependent protein kinase 1 | 79 | 162 | - | - | |
| Glsi10g2295 | 532 | SMART | serkin_6 | 77 | 335 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi10g2295 | 532 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 72 | 510 | - | - | |
| Glsi10g2295 | 532 | Pfam | EF-hand domain pair | 383 | 443 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | Pfam | EF-hand domain pair | 452 | 515 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | MobiDBLite | consensus disorder prediction | 23 | 39 | - | - | |
| Glsi10g2295 | 532 | Gene3D | Transferase(Phosphotransferase) domain 1 | 163 | 346 | - | - | |
| Glsi10g2295 | 532 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 450 | 485 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | FunFam | Calcium-dependent protein kinase 1 | 343 | 518 | - | - | |
| Glsi10g2295 | 532 | SUPERFAMILY | Protein kinase-like (PK-like) | 76 | 341 | IPR011009 | - | |
| Glsi10g2295 | 532 | CDD | STKc_CAMK | 77 | 334 | - | - | |
| Glsi10g2295 | 532 | FunFam | calcium-dependent protein kinase 1 | 163 | 342 | - | - | |
| Glsi10g2295 | 532 | ProSitePatterns | EF-hand calcium-binding domain. | 391 | 403 | IPR018247 | - | |
| Glsi10g2295 | 532 | MobiDBLite | consensus disorder prediction | 40 | 58 | - | - | |
| Glsi10g2295 | 532 | ProSiteProfiles | Protein kinase domain profile. | 77 | 335 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi10g2295 | 532 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 489 | 520 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | ProSitePatterns | Protein kinases ATP-binding region signature. | 83 | 110 | IPR017441 | GO:0005524 | |
| Glsi10g2295 | 532 | SMART | efh_1 | 418 | 446 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | SMART | efh_1 | 489 | 517 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | SMART | efh_1 | 454 | 482 | IPR002048 | GO:0005509 | |
| Glsi10g2295 | 532 | SMART | efh_1 | 382 | 410 | IPR002048 | GO:0005509 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi10g2295 | Glsi-ChrGlsi10 | 19095294 | 19100553 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi10g2295 | 1 | 531 | EF-hand Containing Proteins | AT5G12180 | 82.109 | 0.0 | 914 |
Transcription factors information