Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2275 ATGGCAGCCTGCTTGAAGCCACCAAGGTTACCCAGCAGTGAAGATGACTCTGTGGTACTCTTTTCCACTTCCAATTCTCCTGAAGAGTCCATCATCTCCATTAGCCCTTCTTCTTCTTCTTCTTCCTACCATTCAACCCCACATCAACCCAGAACTGCTCACAGAATTTCTGTGAGTAATCTCTCCTACACTTTGCACCCACAAAAAACCATACCCTTTTCATTTTTTCCCCTTGCTCAAAAACCCAAGCCTGTTGATATACTCAAATCAGTCTCTTTTATAGCTAGAAGTTCTGAGATTGTTTCTGTTGTTGGTCCTAGTGGCACAGGGAAATCTACCCTTCTTCGGGTAATCGCTGGGAGAGTAAAAGATCAAGATTTCGATCCTAAGAGCATATCAATCAATGATCAGGTGATGACTAGTCCAGCTCAGTTGAGGAAAATATGTGGATTTGTTGCACAAGAGGATAATTTGCTTCCTCTTCTAACTGTGAAGGAAACTTTAATGTTCAGTGCCAAGTTTAGGCTAAAGGAAGTGAAAGCCAAGGATAGAGAAGTGAGGGTAGAGAGCTTGATGCAAGAGCTTGGGCTATTTCATGTTGCAGATAGCTTTGTTGGGGATGAAGAGAATAGAGGGATTTCTGGGGGGGAGAGGAAGAGGGTATCTATAGGAGTTGATATGATTCACAATCCTCCAATTTTGCTCCTTGATGAACCTACTTCAGGCCTAGACAGTACTTCAGCTCTACAAGTAATAGAGCTGCTGGCATTGATGGCTAAGGAAAAGCAAAGGATAGTGGTTCTGTCAATCCACCAACCCAGCTATAGAATATTGCAGTACATTTCCAACTTTTTAATCCTTTCCCATGGTTCAGTTGTGCACAATGGCAGCCTCAAATCACTTGAGGAAGCCATAACCAAATTGGGATTTCAAATTCCAATTCAACTCAATGCTTTAGAGTTTTCCATGGAAATCATACACAGATTGAAAGATTCTTCTAGTTCTAAATGTGATACTTCCACTATAGAAGACAAGGAGCCAGAGAAAGAAACTGAAGGTGAGATTCATAGACATTATCACAGTAAAAGAATTGGGAGTTTCTTCTATTTAAACTTGACTGAGATCTTGTTTCTCTGCTCAAGATTTTGGAAGGTGATTTACAGAACAAAGCAGCTTTTCTTAGCCAGAACAATGCAGGCTCTAGTTGGTGGGTTTGGGCTAGCAAGCGTGTATGTAAAGCTGAGGAAGGATGAAGAAGGAGTTGCAGAAAGATTAGGCCTTTTTGCATTTAGTCTTAGCTTTCTCCTCTCCTCTACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGATGTGTTCTAATGAAAGAAGCCTCAAGAGGAGCCTACAAAATTTCTTCTTACATGATTGCCAACACCCTTGTCTTCTTGCCTTTCTTGTTTATAGTATCTCTACTTTTTGCAGTTCCTGTATATTGGATCGTAGGACTCAACCCTTCCCTCGCAGCTTTCACCTTTTTCGCCTTCGTGGTTTGGCTCATTGTGCTCATGGCTAGCTCTCTAGTACTTTTCTTAAGTGCAGTTTCTTCTGATTTCATTTCTGGGAATTCCTTAATTTGCACAGTTCTTGGGGCCTTCTTCCTATTCTCTGGCTACTTTATTCCAAAAGAGAGCATCCCAAAGTATTGGATTTTTATGTACTATGTGTCCCTCTATAGGTACCCTTTGGATTCACTGCTCACAAATGAGTATTGGAATGTTAGAGATGAGTGTTTCTCCAAACAAATAGAGGGCTCAGGTTGCTTACTTACTGGTTTTGACGTGCTGAAGAGTAGAGGACTTGACAAGGACACAAGGTGGATGAATGTGGGGATTATGCTCGGTTTCTTTGTGTTCTATCGTGTGCTTTGTTGGGTTATTCTTGCGCGAAAGGCCTCCAAGACAACAATATAG 1950 0.4144 MAACLKPPRLPSSEDDSVVLFSTSNSPEESIISISPSSSSSSYHSTPHQPRTAHRISVSNLSYTLHPQKTIPFSFFPLAQKPKPVDILKSVSFIARSSEIVSVVGPSGTGKSTLLRVIAGRVKDQDFDPKSISINDQVMTSPAQLRKICGFVAQEDNLLPLLTVKETLMFSAKFRLKEVKAKDREVRVESLMQELGLFHVADSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLALMAKEKQRIVVLSIHQPSYRILQYISNFLILSHGSVVHNGSLKSLEEAITKLGFQIPIQLNALEFSMEIIHRLKDSSSSKCDTSTIEDKEPEKETEGEIHRHYHSKRIGSFFYLNLTEILFLCSRFWKVIYRTKQLFLARTMQALVGGFGLASVYVKLRKDEEGVAERLGLFAFSLSFLLSSTVEALPIYLQERCVLMKEASRGAYKISSYMIANTLVFLPFLFIVSLLFAVPVYWIVGLNPSLAAFTFFAFVVWLIVLMASSLVLFLSAVSSDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWIFMYYVSLYRYPLDSLLTNEYWNVRDECFSKQIEGSGCLLTGFDVLKSRGLDKDTRWMNVGIMLGFFVFYRVLCWVILARKASKTTI 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2275 649 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524|GO:0016887
Glsi10g2275 649 SMART AAA_5 97 320 IPR003593 GO:0016887
Glsi10g2275 649 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 56 314 IPR003439 GO:0005524
Glsi10g2275 649 Pfam ABC-2 type transporter 271 335 IPR043926 GO:0140359
Glsi10g2275 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 304 IPR027417 -
Glsi10g2275 649 Gene3D - 78 324 IPR027417 -
Glsi10g2275 649 MobiDBLite consensus disorder prediction 16 51 - -
Glsi10g2275 649 MobiDBLite consensus disorder prediction 1 51 - -
Glsi10g2275 649 FunFam ABC transporter G family member 23 79 312 - -
Glsi10g2275 649 Pfam ABC-2 type transporter 374 583 IPR013525 GO:0016020|GO:0140359
Glsi10g2275 649 Pfam ABC transporter 88 241 IPR003439 GO:0005524
Glsi10g2275 649 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 37 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2275 Glsi-ChrGlsi10 18751965 18753914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2275 69 297 Calmodulin-binding Proteins AT2G36910 27.236 1.32e-09 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2275 10 18751965 18753914 Glsi10g2275 10 18751965 18753914 ECH