Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2273 ATGGCGAACCAAGGCTCTGGGATCTCCCTCTCCCAACTCTCCCCTACTTCCGAAGAGGAATCCTCCGAACACAGCTCTCGGAGCTTGGCCACGCTCTCCGGAGGCGCCAGCTGCATCGTGGGTACTGTTGCAACTGGCTCCTCCTCCATAGCCAAGCACAAGAAAGCTTCGACTTCCGCCGCCGGCTACTGCATTCTCGGCGGCGACCTCGCTGAACCCCAGTGCTTTCCGGCGTCGAAGAAACCCAGAGGCAGGCCACCCGGCTCGAAGAACAAGCCGAAGCCACCCGTCACGGTCACCAAGGATGACGACCAAGCTCTGAAGCCAGTCATCATCGAGATCGCCGCTGGCTCCGACGTGGTGGAGACCCTGATCCAGTTCGCCCACCGCCGTGAAGTGGGGCTCACGGTGCTCAGTGGGTCCGGGTCCGTCGCTAACGTCACGCTTCGCATCCCAGCTTCCCATGCACCCGCTCTCACCCTCCATGGAACCTTCACCCTTCTATCTCTTTCTGGCTCTTACATAGGCAGCCCAACTTCTTCATCGTCATCTTCTTCGACGAAACCACCTCCTGCTTTTCCCTGTTCATCATTTGGGATTTGTCTTGCAGGAAACCAAGGCCAAGTGTTCGGTGGCATAATCGGAGGGAGGGTTGTTGCGGCGAGTCTGGTGGTGGTGGTGGCGACTTTGTACAAGAACCCTGCGTTTCATAGGCTGCCCAACAATGAAAATGATGATGCTACTGAAGTCGCTGATCTCACTGGCGACCCCGTTGGGAATGCTGCTAATGCGAGCGAGGGTGGGACTAACAACAACAACAACAGCAGCAACGCTATGGCTTTATCTGGTTTCAACGTTGCTAGTCCAAGCCCACTGAACTGCCATGTTCCTTCGGATGTGACTGTGATGCAGCAATGGGGCCACCCCAATCGCCCTCCTAATTACTAG 948 0.5686 MANQGSGISLSQLSPTSEEESSEHSSRSLATLSGGASCIVGTVATGSSSIAKHKKASTSAAGYCILGGDLAEPQCFPASKKPRGRPPGSKNKPKPPVTVTKDDDQALKPVIIEIAAGSDVVETLIQFAHRREVGLTVLSGSGSVANVTLRIPASHAPALTLHGTFTLLSLSGSYIGSPTSSSSSSSTKPPPAFPCSSFGICLAGNQGQVFGGIIGGRVVAASLVVVVATLYKNPAFHRLPNNENDDATEVADLTGDPVGNAANASEGGTNNNNNSSNAMALSGFNVASPSPLNCHVPSDVTVMQQWGHPNRPPNY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2273 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 230 IPR005175 -
Glsi10g2273 315 MobiDBLite consensus disorder prediction 256 276 - -
Glsi10g2273 315 MobiDBLite consensus disorder prediction 76 103 - -
Glsi10g2273 315 ProSiteProfiles PPC domain profile profile. 104 256 IPR005175 -
Glsi10g2273 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 56 275 IPR014476 GO:0003680
Glsi10g2273 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 245 - -
Glsi10g2273 315 MobiDBLite consensus disorder prediction 1 28 - -
Glsi10g2273 315 CDD DUF296 108 216 IPR005175 -
Glsi10g2273 315 MobiDBLite consensus disorder prediction 1 19 - -
Glsi10g2273 315 Gene3D - 107 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2273 Glsi-ChrGlsi10 18727009 18727956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2273 80 315 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 42.917 5.10e-49 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2273 10 18727009 18727956 Glsi10g2273 10 18727009 18727956 ECH