Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2266 ATGGAAGTTTATTGTGAAGCTTACCCACTAGATATTACTACTGATTCTGTCTCAGAAACCCCACTATCTCCTAGTGAGTATCAGTACTTTAATATTAAAGTCTATTATCAAGAAAAATTCTACATGCTGGATGAATCCAATTACCTGTGGCCTATTTGTGATACTACTGATGTGCCTGAGGAAGATCGTGACTTCATAGCGGAGAAGATCTTGACTTATGCGAATCATATGGCTAACGTTACTCACAAGAACCACAAGTTTCTGTATATGAATGTGTTTATGTCAGTCACCCGTTTCAATGAAGATGATGATGAGTTTGTCAAGGAATCTATGGAGTATCAAGTGCATGGCTCGGTGCCTGCATCTAAGTCAGCCATGGATGGATTGGAGAGGGTAAAAATCATGGAAAAGTGTAACTGTGCAATTTGCCTAGAAGATTTCGAAGTTGATTCAAAAGGTGTTCGTATGCCTTGCTTGCACTTATTTCATGAAATTTGTATGATTAATTGGTTGCAAGAAGGCCATTTTAGATGA 534 0.382 MEVYCEAYPLDITTDSVSETPLSPSEYQYFNIKVYYQEKFYMLDESNYLWPICDTTDVPEEDRDFIAEKILTYANHMANVTHKNHKFLYMNVFMSVTRFNEDDDEFVKESMEYQVHGSVPASKSAMDGLERVKIMEKCNCAICLEDFEVDSKGVRMPCLHLFHEICMINWLQEGHFR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2266 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 176 IPR013083 -
Glsi10g2266 177 Pfam RING-like zinc finger 139 166 IPR001841 -
Glsi10g2266 177 CDD RING-H2 140 177 - -
Glsi10g2266 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 174 - -
Glsi10g2266 177 SUPERFAMILY RING/U-box 130 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2266 Glsi-ChrGlsi10 18473634 18474236 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2266 98 172 C3H Transcription Factor Family AT1G68180 38.824 3.91e-11 58.2