Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2263 ATGGAGCGTAAGAAGCACGAGCAATGCCGTATGACAATTGAGCGACGCGCCGAGAGGGAGTTCACGCGCCTCTTACTCTTCCACATGAGGTTGCCTTCAGATTCTGGTGCCTTTGCTGATTGGGCAGCGTCATCCTCCTCTGCCGCCGGCCGCGCTGCCCCGGATGAGCTTTCCCTCGGATTCAATGCAGGACCCACCGCCGGGGCTGGAGGAACTCCCACCGGACCCACCTCCGGAATGTGGTCCGCCACCTCGAGGTCTATCAATTACGGCCTTGCTCCCGATATGGGCATGGTGGGTCTTCGTGACGTATTCGTCGTTGCTCCTGCTTCTTCCTTCCACAACAATAACCATCACCACCAGCATCACGAATCCGCCGTTTTGTCCGATCCTCACGCCATCAACGGCTCGAACCCCGCCACTGCACTCGGAGTCGGGGTAGGCGTCGGCGTCATTCCTCTTCTCACCGCGGCTCCTTGTCTCGGTACATCGTCGAACATGAGTTTGGAAAATGAAAACAACATACTAAATAACCGAAGCAGAAGCGGTGGAATTCAGCTATGGCAAGACCTGCAATCCCAGCACGGTCATTATTTGAAGAAGCAAACTCTTTTAGAGCACAATAGTAGTTCTGGGAATCTGGTTCAGAGTGGTGGAGGTGGAGGTGGTGGGATAACTACTTCGGCTACGAACTCTGGAGGAACGACGTGCCAAGATTGTGGGAACCAGGCGAAGAAAGATTGTAGTCATAGAAGGTGTAGGACTTGCTGCAAAAGTCGAGGTTTTGATTGCGCTACTCACGTTAAGAGCACTTGGGTACCGGCTGCTCGCCGGAGGGAACGGCAGCTCATGGCGGCGGCGGCAGCAGCTCCTGGGTCTAGTGGGTCTACATCTGGTGCCAAGAAACCCAGACTTATAGCGTCACAGACAACTACAACTTCTCATACCTCCACTTCCAATACCACTCCTCCCAGAAGCTTCGACACTAGTTCTAGCCATCAAGATGCGAGTTTCAAAGACAAATTGCCAGGTCAAGTACGTGCACCGGCGGTGTTCAAGTGTGTTCGAGTGACGGCGGTGGAAGATGGGGACGACGAGTACGCCTATCAGGCGGTTGTAAAGATTGGTGGCCATGTGTTCAAAGGTTTTCTATATGATCAAGGGGTTGAAAATAGAGATGGTAATTATCCTAATATATCCGAGCTGCATTTGGGTGGCGGGGGCAGCGGGAGTGGCGGAGGTGGTGATGCTGTTGCCGGGAGAAATGGGGCCTCTTCTTCATCCCCAATACTGGATCCATCTGAAGTTTACGCAGCTTCAGCTGGAGGGTTCCTTGCAGGTTCAACCTATGGTAATCCAATAAATTGA 1368 0.5322 MERKKHEQCRMTIERRAEREFTRLLLFHMRLPSDSGAFADWAASSSSAAGRAAPDELSLGFNAGPTAGAGGTPTGPTSGMWSATSRSINYGLAPDMGMVGLRDVFVVAPASSFHNNNHHHQHHESAVLSDPHAINGSNPATALGVGVGVGVIPLLTAAPCLGTSSNMSLENENNILNNRSRSGGIQLWQDLQSQHGHYLKKQTLLEHNSSSGNLVQSGGGGGGGITTSATNSGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAAAAAAPGSSGSTSGAKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKDKLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGVENRDGNYPNISELHLGGGGSGSGGGGDAVAGRNGASSSSPILDPSEVYAASAGGFLAGSTYGNPIN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2263 455 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 125 440 IPR007818 GO:0003700|GO:0006355
Glsi10g2263 455 MobiDBLite consensus disorder prediction 59 80 - -
Glsi10g2263 455 MobiDBLite consensus disorder prediction 284 341 - -
Glsi10g2263 455 NCBIfam putative zinc finger domain, LRP1 type 236 278 IPR006510 -
Glsi10g2263 455 Pfam Domain of unknown function (DUF702) 234 390 - -
Glsi10g2263 455 MobiDBLite consensus disorder prediction 291 338 - -
Glsi10g2263 455 MobiDBLite consensus disorder prediction 407 429 - -
Glsi10g2263 455 NCBIfam LRP1 C-terminal domain 342 389 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2263 Glsi-ChrGlsi10 18422011 18424555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2263 31 436 C2H2 Transcription Factor Family AT5G12330 50.000 8.62e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Glsi10g2263 DUF702 2.7e-62 No_clan