Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2258 ATGGAAGAATCAAGTGAAATGCAATCAGAAGAGAATAAAGTTTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCAACCCAGGTTATGGCCCTGGAAAATTTTTATGACGAGCACAAATATCCCACAGAGGAAATGAAATTAGAACTTGCTGAGGAGTTGGGCTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAGAGATGAAACATGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAAGACCGCGGCAGTGGACTAGGGCAAGATTCTTGTGGAAGCACTAAACATGGTGATTATAGGCAACTTGATCCGAAAGAGGTTGAGAGTCATGGCCTCTATGGTCATGACTTCTCTGCTGCAGATATGACCTATGAACGAAGGACTCGTTATACTGAAAATGTTAGTGGAACAGATACAACATCGTCTGAGAGTAGCTCGTCTTTAAAAGATCAGTTGTTTTCTCAAGGCCAGGATTCATATAATATGGAGCCTTCTAGTAGATATCTGACGCCTAACAGAGCTCTGCCACCGGTAAATCCCAAAGCTGCAACCAACAAGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATTGAAAATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTATCTGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGAGCATTTGAGTGTCAAGTTGCAGATCCAGTTCATGAATCATTTTATAGTGTGAATCCTGCTCTTCCCAGTCCTCCAGAAATTTCTGCTGTGAAAAGGCAACCCAGTCTTGGATCTAGATATGATTCTTATAATTCCAAATTTAGTTCCCAAGATTCACATATGGAAGTAGCAGATCTTGGCTCCTTGCATGACTCTGAGTTCCAGGATAAGAAATCCCGGCAGCATATGAAACAAAAGCGGACATTTCATAGTTATACAAATCATTTGCCTGGCAGGAACTCCGCCCTGGATATGTATGAAGATTCTACTGGAGAAGCATCTGCTTATAATAGCAGGAAGAATCATAGAATGGGCACCAAGCATGGTGTTGAAGGGATGAGATCTGATTCTGCTTCAAACCATAGCGACCACTATGAAGGGGACGTTGCTGTTAAGCAGACAGAGTCACTGCTGCTTTGCTATGATAAAGTCAATCCAAAGAATGTGCAGAAGAGTGAATACGTAAAACCTAAGCCTTCAAATTCATTACGTAATCCTCGCATTTCTGTTGATACTAAAGAAAGAGGACCATCTCCAAGGATGGAAAAGGAAGAGAAGTTTAACGGAGACAAAAAGGCAAGGAAACAATATCATGATTCAGATAGAGTAAGGGTGCTTCCAAATGAAACCAAGATTGCAAAACGAGTTAAAGATGATCTTCCTCCACAACACAAAGTGAAACATGTACCTGTTGCTGAGATGCAGCCACTAAGAAATCGGAGATCTGCTGTGGAGGTGCCGTCTAGCTTTAGTGAGGACGAAACTGCCGAAACCAGTTCCTCACTGGATTAA 1575 0.4146 MEESSEMQSEENKVSMEKNKKRRLKTPTQVMALENFYDEHKYPTEEMKLELAEELGLTEKQISGWFCHRRLKDKRLLRDETCANGRQDRSSGVIQDRGSGLGQDSCGSTKHGDYRQLDPKEVESHGLYGHDFSAADMTYERRTRYTENVSGTDTTSSESSSSLKDQLFSQGQDSYNMEPSSRYLTPNRALPPVNPKAATNKGYKPSGYLKVKGEIENAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAFECQVADPVHESFYSVNPALPSPPEISAVKRQPSLGSRYDSYNSKFSSQDSHMEVADLGSLHDSEFQDKKSRQHMKQKRTFHSYTNHLPGRNSALDMYEDSTGEASAYNSRKNHRMGTKHGVEGMRSDSASNHSDHYEGDVAVKQTESLLLCYDKVNPKNVQKSEYVKPKPSNSLRNPRISVDTKERGPSPRMEKEEKFNGDKKARKQYHDSDRVRVLPNETKIAKRVKDDLPPQHKVKHVPVAEMQPLRNRRSAVEVPSSFSEDETAETSSSLD 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2258 524 MobiDBLite consensus disorder prediction 83 115 - -
Glsi10g2258 524 MobiDBLite consensus disorder prediction 86 110 - -
Glsi10g2258 524 SMART HOX_1 18 80 IPR001356 GO:0003677
Glsi10g2258 524 MobiDBLite consensus disorder prediction 1 27 - -
Glsi10g2258 524 MobiDBLite consensus disorder prediction 148 180 - -
Glsi10g2258 524 MobiDBLite consensus disorder prediction 7 24 - -
Glsi10g2258 524 MobiDBLite consensus disorder prediction 412 524 - -
Glsi10g2258 524 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 524 - -
Glsi10g2258 524 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Glsi10g2258 524 MobiDBLite consensus disorder prediction 503 524 - -
Glsi10g2258 524 MobiDBLite consensus disorder prediction 429 487 - -
Glsi10g2258 524 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Glsi10g2258 524 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Glsi10g2258 524 Gene3D - 8 92 - -
Glsi10g2258 524 MobiDBLite consensus disorder prediction 145 180 - -
Glsi10g2258 524 CDD homeodomain 20 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2258 Glsi-ChrGlsi10 18352064 18359141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2258 3 524 Homeobox Transcription Factor Family AT4G03250 41.852 3.91e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi10g2258 Homeodomain 6.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2258 10 18352064 18359141 Glsi10g2258 10 18352064 18359141 ECH