Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2257 ATGCTTGGCGGCATGAGATTTGGGAATAGTGATTGGGAAGTGCTTTTTGTTTGGGTAATGTCGCGGACTGATAGAATGACTTCGGATCTTAACAAAACTGGACCTGTGGAAAGAGACACTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGTCCTTTCCGCCTTTCAAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAGGAGGAGAAACACCTTAAACTTAGCCATGTCTCTAGAATTATATCTGGACAACGCACGCCAATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATACCAGTCATTTTCTCTGATCTACAATGATAGGTCACTTGACTTGATTTGCAAAGATAAAGATGAAGCTGAAGTATGGTTCAGTGGTTTGAAAGCATTAATATCACGTAGCCGTCATCCGAAGTGGAGAACAGAGTCAAGAAGTGACGGTATTCCATCTGAAGCTAATAGTCCACGAACATACACTAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGTAGTAATGAAAGCCTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAGAATGGTTTGGATAAAACACTATCTGATGCAATTTTGTATGCTGTTCCCCCAAAGGGGTTCTTCCCTCCAGATTGCGCCAGTGGTTCAGTGCACTCTGTGTCATCAGGAGGATCAGATAGTGTACATGGTCACATGAAGGCAATGACTATTGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAAGGTTCTGGTCATGACGATGGTGATGCATTAGGGGATGTTTTCCTTTGGGGGGAAGGCACAGGGGATGGTGTTCTGGGTGGTGGGATTCAGCGAGTTGGTGGTTGTTCTGGTGTAAAAATGGATTCTCCATTGCCTAAAGCCTTAGAATCTGCAGTAGTACTTGATGTACAGAACATTGCTTGTGGTGGACGGCATGCAGCCTTAGTGACTAAGCAAGGAGAGATTTTTTCCTGGGGCGAGGAATCAGGAGGTAGGCTTGGGCATGGCGTTGACACTGATGTTCTCCATCCAAAGCTCGTAGAAGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACATATTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTTGGGCATGGAAATCAAGTGAGCCACTGGGTCCCAAAAAGGGTAAATGGACCCTTGGAGGGCATGCATGTTTCATCTATCTCTTGTGGACCATGGCATACTGCTGTTGTAACCTCTTCTGGACAATTATTTACTTTTGGTGATGGTACATTCGGTGTTCTAGGCCATGGAGACCGAAAAAGTGTTTCAGTACCAAGGGAAGTAGAGTCCCTTAAGGGACTTCGTACTGTGCGTGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTAGTGGAAGTTATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCGGGTAAGCTGTTTACTTGGGGTGATGGAGATAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAGCCCAACTTTTGTCAAGTTGCATGTGGACATAGTCTGACTGTTGCTCTTACTACCTCAGGTCAAGTATATACGATGGGTAGTCCTGTCTATGGCCAGTTGGGAAATCCTCAGGTTGATGGGAAGCTACCTACACGTGTTGAAGGAAAGCTCTCGAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCGTATCATGTTGCAGTTTTAACTTCAAGGACTGAGGTTTACACATGGGGGAAGGGTGCAAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAATAACCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGTTGCCGTCTGCCATTTAATTTCAAAAGAAAACGTCATAACTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCAAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTAAGAAAAACTATTGAAAGTGACTCTTCATCACATTCTTATGTGAGCAGAAGAGGAAGTATCAATCAGGGGTCACTTGAGTTTATTGATAAGGATGATAAGTTGGATTCAAGATCTCGTAATCAACTTGCTAGGTTTTCTTCAATGGAATCCTTGAAGCAAGTGGAAAGCAGGTCTTCGAAGAAAAACAAGAAATTGGAATTCAACAGTAGTCGAGTCTCACCTGCTCCAAATGGAGGTTCCCAGTGGGGAGCTCTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCGTCGAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGAGCAACATCCCCAATATCGAGGCGGCCCAGTCCACCTCGTTCAACTACTCCAACCCCAACACTGGGAGGACTTACTTCCCCAAAGTTAGTTGTTGATGATGCTAAGAGGACAAATGATAGCCTCAGTCAAGAGGTTATTAAATTAAGAGCGCAGGTGGAAAATTTGACTCGCAAATCTCAACTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAACTGAAGGAAGCAATAGAAATTGCTGGTGAAGAAACTGCTAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCCCTTACTGCCCAGTTGAAGGAAATGGCTGAGAGGCTACCTGTAGGAGCAGCAAGGAATGTCAAATCACCTTCTCTTGCTTCCTTTGGTTCCAGTCCTGGTTCCAATGAAGTCAGCAATGCTTCTATAGATCGATTGAATATTCAAGCTACTAGCCTTGAACCGGAATTGGTGGGATCAAACAACCAGTTACTTTCAAATGGATCAAGCACCATTAGTAACCGTATTGCAGGTCACAATAAACAGAGCCAGTCAGATGCAACGAATAGAAATGGAAGCAGAACAAAGGAAAGTGAATCTCGTAATGAGTCTGAATGGGTTGAGCAGGATGAACCTGGTGTATACATTACACTCACCTCCCTACCAGGAGGCATAAAAGATCTGAAAAGGGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAGGCAGAACAATGGTGGGCAGAGAATCGGGCACGAGTATACGAACAGTACAATGTGCGCATGATTGACAAGTCGACTGTTGGTGTTGGTAGCGAGGACCTGGCTCATTGA 3384 0.4365 MLGGMRFGNSDWEVLFVWVMSRTDRMTSDLNKTGPVERDTEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSRHPKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKTLSDAILYAVPPKGFFPPDCASGSVHSVSSGGSDSVHGHMKAMTIDAFRVSLSSAVSSSSQGSGHDDGDALGDVFLWGEGTGDGVLGGGIQRVGGCSGVKMDSPLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDTDVLHPKLVEALSNTNIELVACGEYHTCAVTYSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGMHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSVPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGQVYTMGSPVYGQLGNPQVDGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNNPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTIESDSSSHSYVSRRGSINQGSLEFIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKLVVDDAKRTNDSLSQEVIKLRAQVENLTRKSQLQEIELERTTKQLKEAIEIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGAARNVKSPSLASFGSSPGSNEVSNASIDRLNIQATSLEPELVGSNNQLLSNGSSTISNRIAGHNKQSQSDATNRNGSRTKESESRNESEWVEQDEPGVYITLTSLPGGIKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTVGVGSEDLAH 1127
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2257 1127 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 680 742 IPR017455 -
Glsi10g2257 1127 Coils Coil 942 962 - -
Glsi10g2257 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 400 IPR000408 -
Glsi10g2257 1127 FunFam Putative E3 ubiquitin-protein ligase HERC1 682 750 - -
Glsi10g2257 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 624 675 IPR000408 -
Glsi10g2257 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Glsi10g2257 1127 Coils Coil 886 927 - -
Glsi10g2257 1127 CDD FYVE_like_SF 685 738 - -
Glsi10g2257 1127 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 494 504 IPR000408 -
Glsi10g2257 1127 SMART fyve_4 674 743 IPR000306 GO:0046872
Glsi10g2257 1127 CDD PH_PLC_plant-like 38 148 - -
Glsi10g2257 1127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 688 749 IPR013083 -
Glsi10g2257 1127 FunFam PH, RCC1 and FYVE domains-containing protein 1 258 509 - -
Glsi10g2257 1127 MobiDBLite consensus disorder prediction 162 192 - -
Glsi10g2257 1127 MobiDBLite consensus disorder prediction 1009 1058 - -
Glsi10g2257 1127 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 335 345 IPR000408 -
Glsi10g2257 1127 Pfam Unstructured region between BRX_N and BRX domain 978 1047 - -
Glsi10g2257 1127 Pfam FYVE zinc finger 676 742 IPR000306 GO:0046872
Glsi10g2257 1127 Pfam Transcription factor regulating root and shoot growth via Pin3 1053 1108 IPR013591 -
Glsi10g2257 1127 ProSiteProfiles BRX domain profile. 1054 1109 IPR013591 -
Glsi10g2257 1127 MobiDBLite consensus disorder prediction 786 823 - -
Glsi10g2257 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 287 348 IPR000408 -
Glsi10g2257 1127 SUPERFAMILY FYVE/PHD zinc finger 676 747 IPR011011 -
Glsi10g2257 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 456 507 IPR000408 -
Glsi10g2257 1127 Gene3D - 518 687 IPR009091 -
Glsi10g2257 1127 Gene3D - 268 517 IPR009091 -
Glsi10g2257 1127 FunFam PH, RCC1 and FYVE domains-containing protein 1 510 681 - -
Glsi10g2257 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Glsi10g2257 1127 MobiDBLite consensus disorder prediction 154 212 - -
Glsi10g2257 1127 MobiDBLite consensus disorder prediction 809 823 - -
Glsi10g2257 1127 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 83 961 - -
Glsi10g2257 1127 Pfam Transcription factor BRX N-terminal domain 937 970 IPR027988 -
Glsi10g2257 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 349 397 IPR000408 -
Glsi10g2257 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 400 452 IPR000408 -
Glsi10g2257 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 519 568 IPR000408 -
Glsi10g2257 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 455 504 IPR000408 -
Glsi10g2257 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 571 620 IPR000408 -
Glsi10g2257 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 625 672 IPR000408 -
Glsi10g2257 1127 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Glsi10g2257 1127 PRINTS Chromosome condensation regulator RCC1 signature 458 472 IPR000408 -
Glsi10g2257 1127 PRINTS Chromosome condensation regulator RCC1 signature 442 458 IPR000408 -
Glsi10g2257 1127 PRINTS Chromosome condensation regulator RCC1 signature 401 417 IPR000408 -
Glsi10g2257 1127 PRINTS Chromosome condensation regulator RCC1 signature 619 640 IPR000408 -
Glsi10g2257 1127 PRINTS Chromosome condensation regulator RCC1 signature 561 579 IPR000408 -
Glsi10g2257 1127 PRINTS Chromosome condensation regulator RCC1 signature 332 345 IPR000408 -
Glsi10g2257 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 401 455 IPR000408 -
Glsi10g2257 1127 SUPERFAMILY PH domain-like 39 147 - -
Glsi10g2257 1127 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Glsi10g2257 1127 MobiDBLite consensus disorder prediction 1009 1041 - -
Glsi10g2257 1127 SUPERFAMILY RCC1/BLIP-II 287 677 IPR009091 -
Glsi10g2257 1127 Gene3D - 38 155 IPR011993 -
Glsi10g2257 1127 MobiDBLite consensus disorder prediction 854 882 - -
Glsi10g2257 1127 MobiDBLite consensus disorder prediction 1042 1058 - -
Glsi10g2257 1127 Pfam Pleckstrin homology domain 41 147 IPR001849 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi10g2257 Glsi-ChrGlsi10 18324888 18336127 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2257 946 1118 Major Intrinsic Protein MIP AT1G31880 34.078 1.11e-15 78.2
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2257 10 18324888 18336127 Glsi10g2257 10 18324888 18336127 ECH