Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi10g2257 | ATGCTTGGCGGCATGAGATTTGGGAATAGTGATTGGGAAGTGCTTTTTGTTTGGGTAATGTCGCGGACTGATAGAATGACTTCGGATCTTAACAAAACTGGACCTGTGGAAAGAGACACTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGTCCTTTCCGCCTTTCAAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAGGAGGAGAAACACCTTAAACTTAGCCATGTCTCTAGAATTATATCTGGACAACGCACGCCAATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATACCAGTCATTTTCTCTGATCTACAATGATAGGTCACTTGACTTGATTTGCAAAGATAAAGATGAAGCTGAAGTATGGTTCAGTGGTTTGAAAGCATTAATATCACGTAGCCGTCATCCGAAGTGGAGAACAGAGTCAAGAAGTGACGGTATTCCATCTGAAGCTAATAGTCCACGAACATACACTAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGTAGTAATGAAAGCCTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAGAATGGTTTGGATAAAACACTATCTGATGCAATTTTGTATGCTGTTCCCCCAAAGGGGTTCTTCCCTCCAGATTGCGCCAGTGGTTCAGTGCACTCTGTGTCATCAGGAGGATCAGATAGTGTACATGGTCACATGAAGGCAATGACTATTGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAAGGTTCTGGTCATGACGATGGTGATGCATTAGGGGATGTTTTCCTTTGGGGGGAAGGCACAGGGGATGGTGTTCTGGGTGGTGGGATTCAGCGAGTTGGTGGTTGTTCTGGTGTAAAAATGGATTCTCCATTGCCTAAAGCCTTAGAATCTGCAGTAGTACTTGATGTACAGAACATTGCTTGTGGTGGACGGCATGCAGCCTTAGTGACTAAGCAAGGAGAGATTTTTTCCTGGGGCGAGGAATCAGGAGGTAGGCTTGGGCATGGCGTTGACACTGATGTTCTCCATCCAAAGCTCGTAGAAGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACATATTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTTGGGCATGGAAATCAAGTGAGCCACTGGGTCCCAAAAAGGGTAAATGGACCCTTGGAGGGCATGCATGTTTCATCTATCTCTTGTGGACCATGGCATACTGCTGTTGTAACCTCTTCTGGACAATTATTTACTTTTGGTGATGGTACATTCGGTGTTCTAGGCCATGGAGACCGAAAAAGTGTTTCAGTACCAAGGGAAGTAGAGTCCCTTAAGGGACTTCGTACTGTGCGTGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTAGTGGAAGTTATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCGGGTAAGCTGTTTACTTGGGGTGATGGAGATAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAGCCCAACTTTTGTCAAGTTGCATGTGGACATAGTCTGACTGTTGCTCTTACTACCTCAGGTCAAGTATATACGATGGGTAGTCCTGTCTATGGCCAGTTGGGAAATCCTCAGGTTGATGGGAAGCTACCTACACGTGTTGAAGGAAAGCTCTCGAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCGTATCATGTTGCAGTTTTAACTTCAAGGACTGAGGTTTACACATGGGGGAAGGGTGCAAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAATAACCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGTTGCCGTCTGCCATTTAATTTCAAAAGAAAACGTCATAACTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCAAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTAAGAAAAACTATTGAAAGTGACTCTTCATCACATTCTTATGTGAGCAGAAGAGGAAGTATCAATCAGGGGTCACTTGAGTTTATTGATAAGGATGATAAGTTGGATTCAAGATCTCGTAATCAACTTGCTAGGTTTTCTTCAATGGAATCCTTGAAGCAAGTGGAAAGCAGGTCTTCGAAGAAAAACAAGAAATTGGAATTCAACAGTAGTCGAGTCTCACCTGCTCCAAATGGAGGTTCCCAGTGGGGAGCTCTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCGTCGAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGAGCAACATCCCCAATATCGAGGCGGCCCAGTCCACCTCGTTCAACTACTCCAACCCCAACACTGGGAGGACTTACTTCCCCAAAGTTAGTTGTTGATGATGCTAAGAGGACAAATGATAGCCTCAGTCAAGAGGTTATTAAATTAAGAGCGCAGGTGGAAAATTTGACTCGCAAATCTCAACTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAACTGAAGGAAGCAATAGAAATTGCTGGTGAAGAAACTGCTAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCCCTTACTGCCCAGTTGAAGGAAATGGCTGAGAGGCTACCTGTAGGAGCAGCAAGGAATGTCAAATCACCTTCTCTTGCTTCCTTTGGTTCCAGTCCTGGTTCCAATGAAGTCAGCAATGCTTCTATAGATCGATTGAATATTCAAGCTACTAGCCTTGAACCGGAATTGGTGGGATCAAACAACCAGTTACTTTCAAATGGATCAAGCACCATTAGTAACCGTATTGCAGGTCACAATAAACAGAGCCAGTCAGATGCAACGAATAGAAATGGAAGCAGAACAAAGGAAAGTGAATCTCGTAATGAGTCTGAATGGGTTGAGCAGGATGAACCTGGTGTATACATTACACTCACCTCCCTACCAGGAGGCATAAAAGATCTGAAAAGGGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAGGCAGAACAATGGTGGGCAGAGAATCGGGCACGAGTATACGAACAGTACAATGTGCGCATGATTGACAAGTCGACTGTTGGTGTTGGTAGCGAGGACCTGGCTCATTGA | 3384 | 0.4365 | MLGGMRFGNSDWEVLFVWVMSRTDRMTSDLNKTGPVERDTEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSRHPKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKTLSDAILYAVPPKGFFPPDCASGSVHSVSSGGSDSVHGHMKAMTIDAFRVSLSSAVSSSSQGSGHDDGDALGDVFLWGEGTGDGVLGGGIQRVGGCSGVKMDSPLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDTDVLHPKLVEALSNTNIELVACGEYHTCAVTYSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGMHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSVPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGQVYTMGSPVYGQLGNPQVDGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNNPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTIESDSSSHSYVSRRGSINQGSLEFIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKLVVDDAKRTNDSLSQEVIKLRAQVENLTRKSQLQEIELERTTKQLKEAIEIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGAARNVKSPSLASFGSSPGSNEVSNASIDRLNIQATSLEPELVGSNNQLLSNGSSTISNRIAGHNKQSQSDATNRNGSRTKESESRNESEWVEQDEPGVYITLTSLPGGIKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTVGVGSEDLAH | 1127 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi10g2257 | 1127 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 680 | 742 | IPR017455 | - | |
Glsi10g2257 | 1127 | Coils | Coil | 942 | 962 | - | - | |
Glsi10g2257 | 1127 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 349 | 400 | IPR000408 | - | |
Glsi10g2257 | 1127 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 682 | 750 | - | - | |
Glsi10g2257 | 1127 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 624 | 675 | IPR000408 | - | |
Glsi10g2257 | 1127 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 520 | 571 | IPR000408 | - | |
Glsi10g2257 | 1127 | Coils | Coil | 886 | 927 | - | - | |
Glsi10g2257 | 1127 | CDD | FYVE_like_SF | 685 | 738 | - | - | |
Glsi10g2257 | 1127 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 494 | 504 | IPR000408 | - | |
Glsi10g2257 | 1127 | SMART | fyve_4 | 674 | 743 | IPR000306 | GO:0046872 | |
Glsi10g2257 | 1127 | CDD | PH_PLC_plant-like | 38 | 148 | - | - | |
Glsi10g2257 | 1127 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 688 | 749 | IPR013083 | - | |
Glsi10g2257 | 1127 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 258 | 509 | - | - | |
Glsi10g2257 | 1127 | MobiDBLite | consensus disorder prediction | 162 | 192 | - | - | |
Glsi10g2257 | 1127 | MobiDBLite | consensus disorder prediction | 1009 | 1058 | - | - | |
Glsi10g2257 | 1127 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 335 | 345 | IPR000408 | - | |
Glsi10g2257 | 1127 | Pfam | Unstructured region between BRX_N and BRX domain | 978 | 1047 | - | - | |
Glsi10g2257 | 1127 | Pfam | FYVE zinc finger | 676 | 742 | IPR000306 | GO:0046872 | |
Glsi10g2257 | 1127 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1053 | 1108 | IPR013591 | - | |
Glsi10g2257 | 1127 | ProSiteProfiles | BRX domain profile. | 1054 | 1109 | IPR013591 | - | |
Glsi10g2257 | 1127 | MobiDBLite | consensus disorder prediction | 786 | 823 | - | - | |
Glsi10g2257 | 1127 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 287 | 348 | IPR000408 | - | |
Glsi10g2257 | 1127 | SUPERFAMILY | FYVE/PHD zinc finger | 676 | 747 | IPR011011 | - | |
Glsi10g2257 | 1127 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 456 | 507 | IPR000408 | - | |
Glsi10g2257 | 1127 | Gene3D | - | 518 | 687 | IPR009091 | - | |
Glsi10g2257 | 1127 | Gene3D | - | 268 | 517 | IPR009091 | - | |
Glsi10g2257 | 1127 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 510 | 681 | - | - | |
Glsi10g2257 | 1127 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 572 | 623 | IPR000408 | - | |
Glsi10g2257 | 1127 | MobiDBLite | consensus disorder prediction | 154 | 212 | - | - | |
Glsi10g2257 | 1127 | MobiDBLite | consensus disorder prediction | 809 | 823 | - | - | |
Glsi10g2257 | 1127 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 83 | 961 | - | - | |
Glsi10g2257 | 1127 | Pfam | Transcription factor BRX N-terminal domain | 937 | 970 | IPR027988 | - | |
Glsi10g2257 | 1127 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 349 | 397 | IPR000408 | - | |
Glsi10g2257 | 1127 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 400 | 452 | IPR000408 | - | |
Glsi10g2257 | 1127 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 519 | 568 | IPR000408 | - | |
Glsi10g2257 | 1127 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 455 | 504 | IPR000408 | - | |
Glsi10g2257 | 1127 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 571 | 620 | IPR000408 | - | |
Glsi10g2257 | 1127 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 625 | 672 | IPR000408 | - | |
Glsi10g2257 | 1127 | PRINTS | Chromosome condensation regulator RCC1 signature | 351 | 367 | IPR000408 | - | |
Glsi10g2257 | 1127 | PRINTS | Chromosome condensation regulator RCC1 signature | 458 | 472 | IPR000408 | - | |
Glsi10g2257 | 1127 | PRINTS | Chromosome condensation regulator RCC1 signature | 442 | 458 | IPR000408 | - | |
Glsi10g2257 | 1127 | PRINTS | Chromosome condensation regulator RCC1 signature | 401 | 417 | IPR000408 | - | |
Glsi10g2257 | 1127 | PRINTS | Chromosome condensation regulator RCC1 signature | 619 | 640 | IPR000408 | - | |
Glsi10g2257 | 1127 | PRINTS | Chromosome condensation regulator RCC1 signature | 561 | 579 | IPR000408 | - | |
Glsi10g2257 | 1127 | PRINTS | Chromosome condensation regulator RCC1 signature | 332 | 345 | IPR000408 | - | |
Glsi10g2257 | 1127 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 401 | 455 | IPR000408 | - | |
Glsi10g2257 | 1127 | SUPERFAMILY | PH domain-like | 39 | 147 | - | - | |
Glsi10g2257 | 1127 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 442 | 452 | IPR000408 | - | |
Glsi10g2257 | 1127 | MobiDBLite | consensus disorder prediction | 1009 | 1041 | - | - | |
Glsi10g2257 | 1127 | SUPERFAMILY | RCC1/BLIP-II | 287 | 677 | IPR009091 | - | |
Glsi10g2257 | 1127 | Gene3D | - | 38 | 155 | IPR011993 | - | |
Glsi10g2257 | 1127 | MobiDBLite | consensus disorder prediction | 854 | 882 | - | - | |
Glsi10g2257 | 1127 | MobiDBLite | consensus disorder prediction | 1042 | 1058 | - | - | |
Glsi10g2257 | 1127 | Pfam | Pleckstrin homology domain | 41 | 147 | IPR001849 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi10g2257 | Glsi-ChrGlsi10 | 18324888 | 18336127 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi10g2257 | 946 | 1118 | Major Intrinsic Protein MIP | AT1G31880 | 34.078 | 1.11e-15 | 78.2 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Glsi10g2257 | 10 | 18324888 | 18336127 | Glsi10g2257 | 10 | 18324888 | 18336127 | ECH |