Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2249 ATGGCCTTCTTCAGGAACTTTTCAAATGAAACAGTGTCACATAGTGCCCTGGAAGAAAAAGGCCGAGGACAAAATGCTGAGAGTGAGAAAGAATTTGATATGAACATGGATGCTCGGTATCATAGTGATTGTGAACCAGATGGTGCCAGTAGATTGCAAAATGAGGCTACAGCTGATGATGGAGTTGGTATGAGAGAATCTAACTTACAGTGTACTGGAAGTAAAACAGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAGCCTATGTGCCATCAGAATGGGACTGAATCTGGGCAGGAATCTCAGAGTGGATCAGACTATAGAAATGTAGAAGGGGCTGATGATAATTCATCAGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAAAAGGAAGCAGGAAAAGGTCCAAGAGGCCATTCTGATGTCCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGATGGAGAAGAGCAAAGTGACTCATTGCATTACAGGGGGATTCATCAACCCACTGGATCAAATTCTTGGCCTCAAAGGATGTCTACTGCTGTCAATAGTCGTGTGAATAGGAATTCTAGGATTTCAGACGTTGCATATGACGATTGTGATGGTGATAATGACGATGGTGACGCTGATTACGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGACGCAGACTTTGAGCCTGCCCCAAGTGGTCGTTCTGCAAACAAGGATAAAGATTGGGAAGGTGAAGACTCGGATGAAGATGATGAGAGTGATGAGAATCTAGACGTGTCTGATGACGACGATTCTTTCTATGCAAGAAAACCCAAGGGTAGGCAACGTGGTAAAGTTGGACGAGGTGTAAAATCTACCCGAGAACGCAAACCATATACTGCATCCAGTCGACAAAGAAGAGTTAAAACATCTTTTGAAGGGGATGAGTCAACTGCAGAGGATTCTGAGAGTGGAAGTGATGATTATTTCAAAAGCATGAAAAAGAGAGGTGCGAATGTTCGAAAAAATAATGGTCAATCTTCAGCAATCACAAGTTTTTCTGGGCGAAACAGTGAGGTTCGCACTTCTACTAGGACGGTTCGGAAGAAAGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCCCAAAAAGAAGAAATTGAAGAGGAGGATGGCGACTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGCATGGCTGATGAGGCTCAAAGGAATAATAGATCAACGGAGCCAGTTTTATGGAGTCACTTGTTTGATTCTGAACCTGATTGGAATGAAATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTACACTGTCAATGGAAGTCATTTGCTGAGCTGCAAAGCCTCAGTGGTTTTAAGAAGGTTTTAAATTATACAAAGAAAGTGACGGAGGACATCAGGTACAGGAACTCAATCTCAAGAGAGGAGATTGAGGTCAACGATGTGAGCAAGGAGATGGACTTAGATATTATTAAGCAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATATTTGGTCAAGTGGCAAGGACTGTCTTATGCTGAAGTGACTTGGGAGAAGGACACAGATATTGCTTTTGCTCAGCATGCTATTGATGAGTACAAGGTTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATTTCCAGCGCAAGAAGAGCAAAGTAAGTTTGCGGAAGCTTGATGAACAGCCTGAATGGTTGAAAGGTGGAAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTGAACAGTTGGAGAAATGACACGAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAGTGCACGGTCCTTTTCTTGTTGTTGTCCCATTGTCTACTTTGTCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATGTTATTGTATATGTCGGTAATCGAGCAGGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGATAAAAAGGTTGGAAGGCCTATAAAATTCAATACACTGTTGACTACATACGAAGTAGTTCTGAAGGATAAGGCTGTTCTTTCCAAGATAAAATGGAATTATCTGATGGTTGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAGCTGTACACGACACTTTCAGAATTTAGCACCAAGAACAAATTGCTTATCACTGGTACTCCACTTCAGAACAGTGTTGAAGAGCTATGGGCTTTGCTTCACTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAATTATAAGAATCTGAGTTCGTTCAATGAAAATGAGCTTGCGAATCTTCACATGGAATTGAGGCCTCACATACTCCGAAGAGTCATCAAAGATGTGGAGAAATCATTGCCCCCAAAAATTGAGCGCATCCTTAGAGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTACTAAATATTGTGGTAGAATTGAAGAAATGCTGCAACCATCCCTTCCTGTTCGAAAGTGCTGACCATGGTTATGGTGGGGACTCAGGAAGTTGTGACAGCAGTAAACTGGAGAGAATTGTCTTTAGCAGTGGAAAGCTTGTCATACTTGATAAGCTACTTGTTAGGTTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGCTGAGTATATGTCACATAGAGGGTTTCAATTCCAGAGACTTGATGGCAGTACAAAGGCTGAGCTACGACAGCAGGCAATGGATCATTTTAATGCATCTGGTAGTGAGGATTTTTGCTTCCTACTTTCAACACGAGCAGGAGGTCTGGGTATTAACCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCCCAAAATGACCTGCAGGCTATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGACATTTTGGAACGAGCTAAGAAGAAAATGGTTCTCGACCATTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAACCAAGAAAGGAGGTCTTTTTGATAAAAATGAGCTGTCAGCAATTTTAAGATTTGGAGCGGAGGAGCTTTTCAAGGAAGAAAGAAACGATGAAGAAAGTAAGAAACGACTCTTAGGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAAGAAGCACATGAGTTATTGAGTGCCTTTAAGGTTGCTAATTTCTGCAATGATGAAGACGATGGGAGTTTTTGGAGCCGTTGGATAAAACCTGATGCAGTAGCCCAAGCTGAAGAAGCTCTGGTTCCACGTGCTGCAAGGAATATTAAAAGCTATGCGGAGGCTAATCAATCTGAAAGAAGTAGTAAAAGAAAAAAGAAAGAACCTGAGCCTTCTGAGCGAGTTCAGAAACGTCGGAAGGCAGAATCTTTAGCTCCTGCAGCGCCAATGATTGAGGGAGCATCCGCTCAAGTGCGAAGTTGGTCATATGGGAATGTGTCTAAAAGAGATGCCCTACGTTTTTCTCGTGCAGTTATGAAATTTGGGAATGAGATCCAAATGCACTTAATAGCTGCTGAGGTTGGTGGTGCATTTGGAGCAGCTCCACCTGAAGCTCAAATGGAACTCTTCAATTCTCTAATTGATGGTTGTAAAGAAGCAGTGGAACTTGGAAGTGTTGACCCAAAGGGGCCTCTGTTGGATTTTTTTGGTGTTCCAGTGAAGGCAAATGATCTGCTTAACCGTGTTCAAGAACTACAACTCCTAGCAAAGCGCATTAGTCGATATGAAGATCCCATTGCACAATTCCGTGTTTTAACATATCTTAAGCCTTCAAACTGGTCTAAGGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGAAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCATGAAGAAGATTGCACCAGTAGAACTTCATCACCATGAAACTTTCCTGCCACGAGCTCCAAATTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAACTTGCTGTTCTTGGTGGTAAGAATGCCAATACTAAAGCAGGACGCAAGCCTTCCAAGAAGGAGAGAGAAAATCTTATGAACATTTCACTGTCACGTGGGCAGGAGAAGAAAAAATTAGGTTCTGCTAAAGTCAATATCCAAATGAGAAAAAAGATATCCCTGAGACCCCAGAGGACTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGACGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTTATGGTTGATGAAATGAAAACCTTGAAACGTCTTCACAGGTTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATCCGCAACTATTTACAGCTTCTTGGGCGAAGGATAGATTATATTGTGTTAGAACATGAAGAGGAACCTTATAAGCAAGATAGGATGACTACAAGATTGTGGAACTATGTCTCTACCTTCTCCCATCTTTCTGGGGAGAGGCTACATCAAATCTATTCCAAGCTTAAACAGGAGCAAGAAGATGAGGCAGGGGTTGGCCCCTCTCGCATCAATGGGTCAGTAGTATCTGGTCCATTTGGCAGAAATAGTAACCCTAATCCATTCCCTCGCCATATGGAGAGACAGAGAGGATACCAAAATGTGACTACCTACCAAATGCCAGAACCAGTTCATAATACCGGAAAATCCGAGGCTTGGAAGCGGAGGAGGAGAGCTGAAGGTGATATTCATTTTCAAGGTCAGCCACCACCTCAAAGATCTTTGAGTAATGAAATCCAAATAGCTGATCCTAACTCACTGGGAATCCTTGGGGCCGGACCATCTGATAGACGTTTTAGCGAGAAACCTTATAGGACCCGAGCTGGTGGGTTGCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAG 5241 0.4175 MAFFRNFSNETVSHSALEEKGRGQNAESEKEFDMNMDARYHSDCEPDGASRLQNEATADDGVGMRESNLQCTGSKTAMVGRWGSTFWKDCQPMCHQNGTESGQESQSGSDYRNVEGADDNSSDGRGERLDSEDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYRGIHQPTGSNSWPQRMSTAVNSRVNRNSRISDVAYDDCDGDNDDGDADYEEEDEADEDDPDDADFEPAPSGRSANKDKDWEGEDSDEDDESDENLDVSDDDDSFYARKPKGRQRGKVGRGVKSTRERKPYTASSRQRRVKTSFEGDESTAEDSESGSDDYFKSMKKRGANVRKNNGQSSAITSFSGRNSEVRTSTRTVRKKVSYVESEESEEADEGKKKKSQKEEIEEEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSHLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQSLSGFKKVLNYTKKVTEDIRYRNSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEVTWEKDTDIAFAQHAIDEYKVREAAMSVQGKMVDFQRKKSKVSLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQVHGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGNRAGREVCQQYEFYNDKKVGRPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSCDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSHRGFQFQRLDGSTKAELRQQAMDHFNASGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKETKKGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLGMDIDEILERAEKVEEKEAEGEEAHELLSAFKVANFCNDEDDGSFWSRWIKPDAVAQAEEALVPRAARNIKSYAEANQSERSSKRKKKEPEPSERVQKRRKAESLAPAAPMIEGASAQVRSWSYGNVSKRDALRFSRAVMKFGNEIQMHLIAAEVGGAFGAAPPEAQMELFNSLIDGCKEAVELGSVDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELAVLGGKNANTKAGRKPSKKERENLMNISLSRGQEKKKLGSAKVNIQMRKKISLRPQRTEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDYIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQEDEAGVGPSRINGSVVSGPFGRNSNPNPFPRHMERQRGYQNVTTYQMPEPVHNTGKSEAWKRRRRAEGDIHFQGQPPPQRSLSNEIQIADPNSLGILGAGPSDRRFSEKPYRTRAGGLPSRQGFSSGIK 1746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 367 408 - -
Glsi10g2249 1746 Gene3D - 602 841 IPR038718 -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 1654 1668 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 95 408 - -
Glsi10g2249 1746 Coils Coil 1131 1151 - -
Glsi10g2249 1746 Gene3D - 521 573 - -
Glsi10g2249 1746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 832 IPR027417 -
Glsi10g2249 1746 FunFam protein CHROMATIN REMODELING 5 isoform X2 521 573 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 116 154 - -
Glsi10g2249 1746 CDD CD1_tandem 404 484 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 174 203 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 1200 1236 - -
Glsi10g2249 1746 SMART ultradead3 607 806 IPR014001 -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 1617 1680 - -
Glsi10g2249 1746 Gene3D - 392 518 - -
Glsi10g2249 1746 Gene3D - 1337 1450 - -
Glsi10g2249 1746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 623 795 IPR014001 -
Glsi10g2249 1746 ProSiteProfiles Chromo and chromo shadow domain profile. 406 485 IPR000953 -
Glsi10g2249 1746 ProSiteProfiles Chromo and chromo shadow domain profile. 519 583 IPR000953 -
Glsi10g2249 1746 CDD CD2_tandem 517 572 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 1 67 - -
Glsi10g2249 1746 CDD SF2_C_SNF 917 1052 - -
Glsi10g2249 1746 Pfam Domain of unknown function (DUF4208) 1520 1612 IPR025260 -
Glsi10g2249 1746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1115 IPR027417 -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 344 366 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 211 238 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 95 115 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 293 321 - -
Glsi10g2249 1746 SUPERFAMILY Chromo domain-like 403 486 IPR016197 -
Glsi10g2249 1746 SUPERFAMILY Chromo domain-like 498 572 IPR016197 -
Glsi10g2249 1746 Pfam Helicase conserved C-terminal domain 928 1041 IPR001650 -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 1205 1229 - -
Glsi10g2249 1746 Gene3D - 842 1072 IPR027417 -
Glsi10g2249 1746 FunFam Chromo domain-containing protein 1 394 519 - -
Glsi10g2249 1746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 931 1082 IPR001650 -
Glsi10g2249 1746 Pfam SNF2-related domain 630 899 IPR000330 GO:0005524|GO:0140658
Glsi10g2249 1746 SMART chromo_7 517 576 IPR000953 -
Glsi10g2249 1746 SMART chromo_7 404 487 IPR000953 -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 255 273 - -
Glsi10g2249 1746 FunFam Photoperiod-independent early flowering 1 581 855 - -
Glsi10g2249 1746 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 842 1072 - -
Glsi10g2249 1746 Pfam Chromo (CHRromatin Organisation MOdifier) domain 520 572 IPR023780 -
Glsi10g2249 1746 SMART helicmild6 957 1041 IPR001650 -
Glsi10g2249 1746 SMART DUF4208_2 1508 1613 IPR025260 -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 15 48 - -
Glsi10g2249 1746 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 189 1677 - -
Glsi10g2249 1746 MobiDBLite consensus disorder prediction 1709 1746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2249 Glsi-ChrGlsi10 18256162 18277482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2249 633 1068 RAD5 or RAD16-like Gene Family AT1G02670 26.233 1.95e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi10g2249 SNF2_N 6.7e-65 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2249 10 18256162 18277482 Glsi10g2249 10 18256162 18277482 ECH