Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2246 ATGCACAACACCATGGAAGTTTATTGCGAAGTAAACCCACTAGATATTCCTGCTGATTCTGTTTCAGAAAACTCATTATCTCCCAGTGATAGTATTAGTCAGTACTTCATCGTTAAAGTCCAGTATGATGTAAACTTCTACATACTGGACCAAAACAATAACTCGTGGCCTATTTGCGATACCAGTGAGCATGTTAATTCATACATCCCAAAGGAGACAATACAACAAGAAACTTGCAGATTGCTTTCTTGGTTGAATGTGCCTGAGGAAGCTCATGGCTTCATACTAGAGAAGGTCTCGACTTGTGCGAATCGTATGGTTAACGTTACACACAAGAACCACAAGATTCTATATATGAATGTGGTTATGTCAATCACTCAGCTCGATGAAGATGATGATGGGGTTGTGGGGGAATCTACGGAGGATCCAGGGGTTGGCTTGGTGCCTGCATCTAAGTCAGCCATTGATGGATTGAAGAGGGTGAAAGTCATGGAAAACTGCAACTGTGCAATTTGCTTAGAAGATTTTGAAGTTGATTCAGAAGGTGTTCGTATGCCTTGCTTGCACTTATTTCATGAAGTTTGCATGGTTAATTGGTTGCGGCAGGGCCATTCCTGCCCTTTATGTCGCTTCGAGATGCCTACCAGTGAGAGTGAACGAGAGCACAGATAA 672 0.4241 MHNTMEVYCEVNPLDIPADSVSENSLSPSDSISQYFIVKVQYDVNFYILDQNNNSWPICDTSEHVNSYIPKETIQQETCRLLSWLNVPEEAHGFILEKVSTCANRMVNVTHKNHKILYMNVVMSITQLDEDDDGVVGESTEDPGVGLVPASKSAIDGLKRVKVMENCNCAICLEDFEVDSEGVRMPCLHLFHEVCMVNWLRQGHSCPLCRFEMPTSESEREHR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2246 223 Pfam Ring finger domain 168 210 IPR001841 -
Glsi10g2246 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 216 IPR013083 -
Glsi10g2246 223 SUPERFAMILY RING/U-box 160 216 - -
Glsi10g2246 223 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Glsi10g2246 223 SMART ring_2 169 209 IPR001841 -
Glsi10g2246 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2246 Glsi-ChrGlsi10 18235744 18236415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2246 146 221 C3H Transcription Factor Family AT5G01980 45.679 2.35e-16 75.5