Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2245 ATGGAAGTTTATTGCGAAGCTTACCCTGTACTAGATATTCCTACTGATTCTGTTTCAGAAAACCCATCATCTCCCAGTGATGGTATTAATCAGTACTTCATCGTTAAAGTCCAGTATGATGTAAACTTCTACATACTGGCCGAAAATAATTACTTGGGCCCTATTTGCGATACCAGTGAGCACGTTAATTCATACATCCCAAAGGAGGCAATACAACAAGAAACTTGCAGATTGCTTTCTTGGTTGAATGTGCCTGAGGAAGCTCATGAATTCATACTAGAGAAGGTCTTGACTTGCGCCAATCGTATGGTTAACGTTACGCACAAGAACCACAAGATTCTATATATGAATGTGGTTCTGTCAATCTCTCAGCTCGATGAAGATGATGATGGGGTTGTGGGGGAATCGATGGAGGATCAAGGGGTTGGCTTGGTGCCTGCATCTAAGTCGGCCATTGATGGATTGGAGAGGGTGAACGTCATGGAAAACTGCAACTGTGCAATTTGCTTAGAAGATTTCGAAGTTGATTCTGAAGGTGTTCGTATGCCTTGCTTGCACTTATTTCATGAAGTTTGCATGGTTAATTGGTTGCAACAGGGCCATTCTTGCCCTTTGTGTCGCTTTGAGATGCCTACCAGTGAAAGTGAACGAGAGCAAAGATAA 663 0.4253 MEVYCEAYPVLDIPTDSVSENPSSPSDGINQYFIVKVQYDVNFYILAENNYLGPICDTSEHVNSYIPKEAIQQETCRLLSWLNVPEEAHEFILEKVLTCANRMVNVTHKNHKILYMNVVLSISQLDEDDDGVVGESMEDQGVGLVPASKSAIDGLERVNVMENCNCAICLEDFEVDSEGVRMPCLHLFHEVCMVNWLQQGHSCPLCRFEMPTSESEREQR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2245 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 213 IPR013083 -
Glsi10g2245 220 SMART ring_2 166 206 IPR001841 -
Glsi10g2245 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 111 211 - -
Glsi10g2245 220 SUPERFAMILY RING/U-box 157 213 - -
Glsi10g2245 220 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
Glsi10g2245 220 Pfam Ring finger domain 165 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2245 Glsi-ChrGlsi10 18230952 18231614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2245 143 219 C3H Transcription Factor Family AT5G01980 45.122 8.08e-17 76.6