Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2242 ATGATTAGTACCGTCTTGAGAAGATCTTCTTCCATAGTCACAAGGCGCACTTTCGCCGCCTTCTCGTCTATCGAGTCTGTTCTGCATCACCATCACCCCCTGAATACATCATCCACCACGTCGGCCGCTGGATATGGTGTGGTTGGTGGTGAGCCTCGATCATTTTCCAGCTTCTTTGGAGACATTGGATTCAAGTCAAGGGCCTTTCACGCCAAAGCGGGGCCGTTGAATTTCCGGGCGTCATTGGTTCCTTATGCGGAGTATGCTGTAGATGATTATGCCCATGAAGAAGGGCCTAGAGGAAACCATGATGAAGGGCTTGAGATCTCGAAGCTTGGCATTGCCCAGGATATTGTGGATGCTTTGGCCAAGAAAGGTATAACGAAGCTCTTCCCCATACAGAAAGCTGTGCTGGAACCTGCGACGCAAGGGCGTGATATGATCGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGAATACCTATCTTGGATAAGATCATTCAGTTTAATGCTAAGCATGGACGAGGGAGGAATCCTCTGGCTTTGGTTTTGGCACCAACTAGAGAACTTGCTCGGCAGGTTGAGAAGGAATTCTATGAGTCAGCACCTAATTTGGATACAATTTGTGTTTATGGGGGCACACCAATTTCGGGCCAAATGAGGCAGCTTGACTATGGTGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAACAGAGGTTCTCTAAATTTGAAGGAAGTTCAGTTTGTTGTTCTTGATGAAGCCGATCAGATGCTTCAAGTGGGCTTTCAGGAAGATGTTGAGAAAATCTTGGAGAGGCTGCCACCAAAACGTCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGCAGCTTACCCGCAATTACTTAAAAAATCCAGTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCCTTGTTCTCAATTGCATCAGATATGTATGGAAAAGCAGGAATTCTTAAATCTCTTATAACAGAACATGCGAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTGTCATATTCCATGGCGAAAAGCCTTAGGTGTGAGGCCTTGCATGGAGATATTTCACAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTTAGAGAAGGTCATTTCAATGTTTTAGTAGCAACTGATGTTGCTTCACGTGGGCTTGATATACCAAATGTTGACCTTGTAATACATTACGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCAGGAAGAACAGGTCGGGCTGGGAAGAAAGGGACTGCTATTCTTATTTATTCACAAGATCAATCCAGGGCTGTTAGGATTATTGAGCGTGATGTAGGCTGCAGATTTTCGGAGCTCCCAAAAATTACTGTTGAAGCTGGATCAATAGACATGCCTAGTGACATGGGTGGTGGTGGTCGATTTGGCTCTTTTGGAGGTACGAGGGATCGTCGCTTTGGCGATGCAGTCAATCAGGTGGGGGGTTTGGGGGATCCTTTGGTAAATCTTCTGGTGAGGGTAGATATGGTGGACCAAGCTCTGGTCGTTATGGTTCCTTTGGTGGCTCTGGAAGTGGATTTGGCAGACCTGGAGGAGGAAATACCAGCGGATCTGGACATATTCGCCAAGGTGGTGCTGGCGGATTTGGTAGTTCAGATCGTTCTGGTGGTTTTGGCTCTGGTCAATCAAGCGCATTTGGTGACAGAAATTCAAGCCAAAAGGGTGCATTTGGTGATTCTCGAGGTGGTCGCTTTGTGTATGACAATGATCGGAATGACGGAGGAAGGCCCTTCTAACTATATGGCATATAGGCTAATCCCCACATTACGAAGGATGGAGGAGGTTATGGCACAATGA 1929 0.4562 MISTVLRRSSSIVTRRTFAAFSSIESVLHHHHPLNTSSTTSAAGYGVVGGEPRSFSSFFGDIGFKSRAFHAKAGPLNFRASLVPYAEYAVDDYAHEEGPRGNHDEGLEISKLGIAQDIVDALAKKGITKLFPIQKAVLEPATQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGRNPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISGQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKEVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQLTRNYLKNPVTIDLVGDSDQKLADGISLFSIASDMYGKAGILKSLITEHAKGGKCIVFTQTKRDADRLSYSMAKSLRCEALHGDISQAQRERTLAGFREGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILIYSQDQSRAVRIIERDVGCRFSELPKITVEAGSIDMPSDMGGGGRFGSFGGTRDRRFGDAVNQVGGLGDPLVNLLVRVDMVDQALVVMVPLVALEVDLADLEEEIPADLDIFAKVVLADLVVQIVLVVLALVNQAHLVTEIQAKRVHLVILEVVALCMTMIGMTEEGPSNYMAYRLIPTLRRMEEVMAQ 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2242 642 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 108 483 - -
Glsi10g2242 642 FunFam Nucleolar RNA helicase II 334 492 - -
Glsi10g2242 642 Pfam DEAD/DEAH box helicase 131 300 IPR011545 GO:0003676|GO:0005524
Glsi10g2242 642 SMART ultradead3 126 329 IPR014001 -
Glsi10g2242 642 Gene3D - 108 316 IPR027417 -
Glsi10g2242 642 FunFam ATP-dependent RNA helicase RhlE 100 315 - -
Glsi10g2242 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 467 IPR027417 -
Glsi10g2242 642 CDD SF2_C_DEAD 338 455 - -
Glsi10g2242 642 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 312 IPR014001 -
Glsi10g2242 642 Gene3D - 330 488 IPR027417 -
Glsi10g2242 642 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 485 IPR001650 -
Glsi10g2242 642 SMART helicmild6 366 446 IPR001650 -
Glsi10g2242 642 Pfam Helicase conserved C-terminal domain 340 446 IPR001650 -
Glsi10g2242 642 CDD DEADc 118 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2242 Glsi-ChrGlsi10 18204302 18208928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2242 110 478 Eukaryotic Initiation Factors Gene Family AT3G19760 33.681 6.44e-70 231