Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2237 ATGATTGTGCTGGATGGAGGGTTGAACCTAAGATCTCTGATATCTCCAGGTTTTGTGCTGGGGTTTGAGTTGCAGAAGCTGTTTTTGGGGTTGGGGTTTTGTGGGTTGGCTAAGAGTGGTTTTAGTTTTTTGGAAGCTGCATCTATATTTAAAAGCATGAGGCTGTCATCATCCGGACTTGGTCAACCTTGTCAGGAAGGGGAGAAAAAATGTTTGAATTCTGAACTGTGGCATGCATGTGCTGGCCCTCTGGTGTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACAAACAAGGAAGTAGATGCACATATTCCCAATTACCCTAGCTTGCCACCTCAGCTTATTTGCCAGCTTCACAATGTGACAATGCATGCAGATGTGGAAACTGATGAAGTATATGCTCAAATGACTCTCCAACCTTTAAGCCCACATGAGCAAAAGGATGTGTATCTACTGCCTGCAGAATTGGGTACTCCCAGCAAACAACCAACCAACTACTTCTGTAAAACGTTAACTGCAAGTGATACCAGCACTCATGGAGGATTCTCTGTTCCTCGCAGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGTAGGTCATATTGACTTATTGGTTTTGTCAATTATATCTGACTTGCAACAGGATTACTCGCAGCAGCCTCCTGCACAAGAACTAATTGCTAGGGATCTTCATGATAATGAATGGAAATTCAGGCATATTTTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACAGGGTGGAGTGTCTTTGTAAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAATTACTCTTGGGTATCCGGCGAGCAAATCGTCCACAGACTGTTATGCCATCATCGGTTCTGTCAAGTGATAGCATGCACATAGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTTACTATATTCTTTAACCCTAGGGCAAGCCCATCGGAATTTGTCATTCCCTTGGCCAAGTACGTTAGAGCTGTGTATCATACTCGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACTGAAGAATCAAGTGTCCGTCGGTACATGGGTACTATAACAGGCATTAGTGATCTAGATCCTGTTCGCTGGCCAAATTCACATTGGCGTTCTGTGAAGGTTGGTTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCATTGACGACATTCCCTATGTACCCATCCCCATTCCCTCTGAGGCTGAAACGCCCTTGGCCATCAGGACTACCTTCTTATGGTCTCAAGGATGGTGACATGAGCCTTAATTCTCCTTTAATGTGGCTCCCAGGTGGGATTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTTGGGGTTACACCATGGATGCAGCCAAGACTTGATGCTTCTATATCAGGTCTCCAACCAGAGATATACCAAGCAATGGCCACTGCAGCACTCCAGGAAATGAGGACAACGGATCCATCCAAGTCTTCTTCCCAATCTCTGCTGCAGTTCCAGCAGCCTTCAAATATTCCTGGTGCTCCTACTTCTGTAATTCAGAGGCAAGTGTTACAACAGCCCCAGTCCCAAAATACCCTTCTACAAAATTTTCAAGAAAACCAGATTTCTGCTCAGTCTCCACTTCTGCAACGACAGTTGCAGCGATACCATCCTTATAATGATCAGAGGCAACATCAGCAGCAGCAACAACTGAATAATTTGCCTGTTCAGCAGCAGATCTCAAATGTCATCTCTCCTTTGTCTAATTTTGCATCAGCTACCCAGTCTCATTCTCCATCCATGCAAGCTATAGCTTCAAATTGCCAGCAACAGTGTTTTCCTGAACCTGTCAGGAACCAAATTTCCAGCTCTGATGTTTCTCCTATCCATAGTCTATTAGGATCATTTCCCCAGGATGGTGCATCCCATTTACTGAATTTGAATGGATCCAACTCTGTGATCTCTTCCACTTCCTTACTACCTAAGCAAATTACAGTTGAACCTCAGCTTCAATCTGCTGCTGCTCAGAGTGTATTACCTCAGGTGGAAAACTTGGGAACTCCAAAATCAAATGTATCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCAAGTTGCTGCTGATCCTCAGAGCAATCTTTTGTTTGGGGTTAACATTGATCCTTCTTCTCTTATGTTGCAAAATGGCATGCCAAACCTGAGACACGTTGGCAATGAGAATGATCCATTATTGATGCCATTTTCTACTTCAAACTTTGCTGGTGCTACAGGGACTGATTTTCCATTAGGTTCAGACATGACAACATCAAGTTGTGTAGATGAATCAGGCTTCTTGCCGTCTTCTGAAAATGTAGACCAAGCAAATACATCGACTAAAACCTTTGTCAAGGTTCACAAGTCAGAGTGCTTTGGGAGGTCACTGGACATATCTAAGTTCAGCAGCTACGATGAACTGCGCAGTGAGCTTGCCCGTATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATACTGTCTCCACTTGAAGTGCAACAGATGGGCAAAGAAGGTCTTGGTCCTGCTGCTTCTGTACGGGGTCACAAGCTCTCGACTACTAGCATCCCTTGCGATAACTATGCAAGTCGACAAGAATTGCGAAGTTCGGGCATTGCGACAATGGGGCCTCTTGACTACTAA 2889 0.4528 MIVLDGGLNLRSLISPGFVLGFELQKLFLGLGFCGLAKSGFSFLEAASIFKSMRLSSSGLGQPCQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPHEQKDVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLVGHIDLLVLSIISDLQQDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVRAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSYGLKDGDMSLNSPLMWLPGGIGDQGMQSLNFQGLGVTPWMQPRLDASISGLQPEIYQAMATAALQEMRTTDPSKSSSQSLLQFQQPSNIPGAPTSVIQRQVLQQPQSQNTLLQNFQENQISAQSPLLQRQLQRYHPYNDQRQHQQQQQLNNLPVQQQISNVISPLSNFASATQSHSPSMQAIASNCQQQCFPEPVRNQISSSDVSPIHSLLGSFPQDGASHLLNLNGSNSVISSTSLLPKQITVEPQLQSAAAQSVLPQVENLGTPKSNVSELAALPPFPGREYSAYQVAADPQSNLLFGVNIDPSSLMLQNGMPNLRHVGNENDPLLMPFSTSNFAGATGTDFPLGSDMTTSSCVDESGFLPSSENVDQANTSTKTFVKVHKSECFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKEGLGPAASVRGHKLSTTSIPCDNYASRQELRSSGIATMGPLDY 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2237 962 FunFam Auxin response factor 178 299 - -
Glsi10g2237 962 SUPERFAMILY CAD & PB1 domains 822 903 - -
Glsi10g2237 962 Gene3D - 361 433 - -
Glsi10g2237 962 MobiDBLite consensus disorder prediction 519 542 - -
Glsi10g2237 962 Gene3D - 178 298 IPR015300 -
Glsi10g2237 962 Pfam B3 DNA binding domain 180 298 IPR003340 GO:0003677
Glsi10g2237 962 SMART B3_2 180 299 IPR003340 GO:0003677
Glsi10g2237 962 Pfam Auxin response factor 323 406 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi10g2237 962 SUPERFAMILY DNA-binding pseudobarrel domain 165 326 IPR015300 -
Glsi10g2237 962 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 68 919 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi10g2237 962 FunFam Auxin response factor 361 433 - -
Glsi10g2237 962 CDD B3_DNA 179 297 IPR003340 GO:0003677
Glsi10g2237 962 Gene3D - 824 918 - -
Glsi10g2237 962 FunFam Auxin response factor 824 918 - -
Glsi10g2237 962 ProSiteProfiles B3 DNA-binding domain profile. 180 299 IPR003340 GO:0003677
Glsi10g2237 962 Pfam AUX/IAA family 820 911 IPR033389 -
Glsi10g2237 962 ProSiteProfiles PB1 domain profile. 829 913 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2237 Glsi-ChrGlsi10 18135883 18152829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2237 53 559 B3 DNA Binding Superfamily AT1G30330 81.676 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi10g2237 B3 1.4e-19 CL0405